Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04793 and BL03359
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence dna-align/BSNT_04793___yunG.1.5803.seq
# -bsequence dna-align/BL03359___yunG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04793___yunG-BL03359___yunG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04793___yunG-BL03359___yunG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04793___yunG
# 2: BL03359___yunG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 428
# Identity: 221/428 (51.6%)
# Similarity: 221/428 (51.6%)
# Gaps: 133/428 (31.1%)
# Score: 515.5
#
#
#=======================================
BSNT_04793___ 1 ATGGAGCAT----------GTCAAAT-----ACATACT-TAAGC------ 28
|||||..|| |.||||| |.|||.| .||||
BL03359___yun 1 ATGGATGATCATTACCTTGGACAAATCGAACAAATAGTGAAAGCATTGTA 50
BSNT_04793___ 29 --AATCCTGGTC----GCGCCATTCGAGCTCTAAATGGACGGAAGAAT-- 70
|||||||||| | ||||.||.||.||||||| |.|||.||
BL03359___yun 51 TAAATCCTGGTCTTCAG----ATTCAAGTTCAAAATGGA-GTAAGGATAA 95
BSNT_04793___ 71 GCCCGTCATGCGGCCAATGCGGCGTGACGGCATTGG-------TGATTCA 113
.||.|.||.| ||.|||||||||||.||.||..|.| ||||
BL03359___yun 96 CCCTGCCAAG-GGACAATGCGGCGTAACCGCGCTAGTCGTAAATGAT--- 141
BSNT_04793___ 114 AGACCAT-TTCGGCGGCACGATTTTCAAAACAAAAGTCGGTGAGAGCTGG 162
|| ||.||.||....||....||||||||..|...|||..|.|||
BL03359___yun 142 -----ATATTAGGTGGAGAAATAAAGAAAACAAAGCTGCCTGAAGGGTGG 186
BSNT_04793___ 163 CATTTTTACAACAGCATCAATGGTGTGATGTACGATTTTACGAGTGAGCA 212
||||||||.||.....||||||||...|..||.|||||.|||
BL03359___yun 187 CATTTTTATAATTTTGTCAATGGTAAAAGATATGATTTAACG-------- 228
BSNT_04793___ 213 GTTTC---------AGGCGCCTAT--TGAATATCAGCATATTCCTTCCTC 251
||||| ||..|.| || ||.|||| |.|||||| ||||
BL03359___yun 229 GTTTCTCAATTCAAAGAAGAC-ATCCTGTATAT--GGATATTC---CCTC 272
BSNT_04793___ 252 A---AGAGAAGAGGCGTTTTTAGATACGAATGAGGAACAATATCAGCATC 298
| |||||.|||||.||.|.||||||.|..||..||||.|||.|
BL03359___yun 273 AAATAGAGACGAGGCATTCTCAGATACCAGCGAAAAACAGTATAA----- 317
BSNT_04793___ 299 TTCGTTCT-----GCATTTTCCCGCCA-TATGAAC-AGCATTTCCAAGGA 341
||.| |||| | |||||.| |.|||||.|
BL03359___yun 318 ----TTATTTAAAGCAT---------AGTATGATCAATCATTTGC----- 349
BSNT_04793___ 342 AACCTGA--------------------- 348
|.||.
BL03359___yun 350 --CTTGTTCAAATAGTAAGTTACGCTAG 375
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