Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05409 and BL03357
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:32
# Commandline: needle
# -asequence dna-align/BSNT_05409___tuaH.1.5803.seq
# -bsequence dna-align/BL03357___tuaH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05409___tuaH-BL03357___tuaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05409___tuaH-BL03357___tuaH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05409___tuaH
# 2: BL03357___tuaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1323
# Identity: 820/1323 (62.0%)
# Similarity: 820/1323 (62.0%)
# Gaps: 270/1323 (20.4%)
# Score: 2382.5
#
#
#=======================================
BSNT_05409___ 1 GTGGAAACAAAAGAAG--CAA-TCATTCATGTCATCGTTGCCACTGCTGA 47
||| ||||.|| ||| ||||.||.|||||.||.||.||.|.|||
BL03357___tua 1 GTG------AAAGCAGATCAATTCATACACGTCATAGTAGCGACAGGTGA 44
BSNT_05409___ 48 ATGGGGAAAAGACCAATTGAGATACAGAAGGCACCGGCTGGCAGAATTTT 97
||||||..|.||.||..|.|||||||||||||||||.||.||.||.||||
BL03357___tua 45 ATGGGGGCAGGATCAGCTAAGATACAGAAGGCACCGCCTTGCTGAGTTTT 94
BSNT_05409___ 98 TAGCTGCTCAGG-----AGGAAACGAAGGAAGTTATTTGGGTATGTCCGG 142
||| |||| ||||.|||||||||||.||||||||.||||||.
BL03357___tua 95 TAG-----CAGGCCGCAAGGAGACGAAGGAAGTCATTTGGGTTTGTCCGT 139
BSNT_05409___ 143 C----------TCCGCGTGCCCAAGGGAAAGAGTTTCAGGAAGTCCATT- 181
| ||| |||| |||.||| |.||||
BL03357___tua 140 CTGAAAATCCTTCC-CGTG----------AGACTTT-------TACATTG 171
BSNT_05409___ 182 CT-------GGCATCAGGCAATTCGCTGTCAAAGACCTGCTGCAGAAAAA 224
|| ||.||||.||||||.||.||||||||..|..||.|.||.||
BL03357___tua 172 CTTGACAACGGAATCAAGCAATTTGCAGTCAAAGATTTTTTGAAAAAGAA 221
BSNT_05409___ 225 AATGTTTCGTTTCGGACGATATACAGATGTCTTTTA-CAAA-CATAAGCT 272
|||.||..|.||.|..||.||.|.||||||.||.|| |||| | |||||
BL03357___tua 222 AATATTCAGGTTTGCCCGCTACAAAGATGTTTTCTATCAAAGC--AAGCT 269
BSNT_05409___ 273 CTCCCCATTACTCGATGAGCTTACAC-CTGCTT------CTGCAA----A 311
|| ||| | |||||| |||.|| |
BL03357___tua 270 -------------GA--AGC-----CGCTGCTTGACCGGCTGAAAGAAGA 299
BSNT_05409___ 312 CGGT-------GAACGCTGCTGTTTATGGTACACGTTTCCCGGATTCCCG 354
||.| .||.|.|| ||.|||||||||||.||.|||||.||.|||
BL03357___tua 300 CGTTCAGGGAGAAAAGGTG-TGCTTATGGTACACCTTCCCCGGCTTTCCG 348
BSNT_05409___ 355 CTGCTGTCTTCGCTGTATCCTTGGGATCAGGTCATTTATGACTGCAGTGA 404
||||||||.|||||.||||..||||||||||||||.|||||||||||.||
BL03357___tua 349 CTGCTGTCGTCGCTTTATCAATGGGATCAGGTCATCTATGACTGCAGCGA 398
BSNT_05409___ 405 CTTATGGGCTGCGCCGATCAGCGGCCGATCAAATCTGC--TGTCT--GAA 450
|.|.|||||.||.|||||||||||..| .|||| || ||||| |.|
BL03357___tua 399 CCTGTGGGCGGCCCCGATCAGCGGTAG-CCAAA---GCCTTGTCTCAGGA 444
BSNT_05409___ 451 TTCCGGCGAAAAGTCATT----AAAACGGCAGAGCTG-----AGAATTAT 491
|||.|||.|||.|||||| | ||||| |||||.||
BL03357___tua 445 TTCAGGCAAAAGGTCATTTTTGA---------AGCTGAAGGCAGAATCAT 485
BSNT_05409___ 492 ACAACG-AGCAGATTCAATAACCTGTT----CATCAGATTATCTT----C 532
|||.| .||.|||.|.|| |.|| |.||.||.|| ||| |
BL03357___tua 486 -CAAAGCTGCTGATACGAT----TTTTTGCACTTCCGAATA-CTTGCAAC 529
BSNT_05409___ 533 ACAAGGAAGTAGACAAAAAACTGACTGC-AGGACGAGAAAA----GGTTC 577
|.||.|.||.|| ||.|.||.| |||| ||||.|| ||||.
BL03357___tua 530 AAAATGTAGCAG-------ACCGGCTTCAAGGA-GAGACAAAGCCGGTTT 571
BSNT_05409___ 578 ATACAGTGGAAAACGGTGTGGAGTATGAGC-TGTTTTCTGCAAATA---A 623
.||||.|.||||||||||||||||| .||| |||||.|.|.||||| |
BL03357___tua 572 TTACAATCGAAAACGGTGTGGAGTA-CAGCTTGTTTGCAGAAAATATGCA 620
BSNT_05409___ 624 ACAAGCTCCCGATCGCAGTATACTGCAGGGGAGAGAAGGAACAGTGTTAG 673
|.||| |.||| |||| ||.||||.||.||||||||.||..|.|
BL03357___tua 621 AAAAG---CGGAT----GTAT--TGAAGGGAAGGGAAGGAACCGTCCTCG 661
BSNT_05409___ 674 GTTTTATCGGCGGAATTAAACCGAAGCTCGATTTTAAAATGATTGAAGAA 723
|.||||||||.|||||.||.|||||||||||||||||..|..|..|||||
BL03357___tua 662 GCTTTATCGGAGGAATCAAGCCGAAGCTCGATTTTAAGCTCGTCAAAGAA 711
BSNT_05409___ 724 GCCGCC----CTGCAAAAGCCTGATTGGACATTTTTATGGGTTGGCCCGG 769
||.||| |...|||| ||.|||||||||||||..||.||.||.|
BL03357___tua 712 GCTGCCAGAACAAAAAAA----GAGTGGACATTTTTATTTGTCGGTCCTG 757
BSNT_05409___ 770 ATGCCACCAATGGTGACG----TTTCGTTTCAAGAGCTGCT----GAGGC 811
|.|..||.||.||.|||| | |||.|||.|||.|| ||.|.
BL03357___tua 758 ACGGGACAAACGGAGACGAAGAT----TTTAAAGCGCTTCTTGAAGAAGA 803
BSNT_05409___ 812 TTCCCAATGTTATATGGACCGGCCCGGCGGATCCGAAAGAAGTTCC-GCA 860
| |||||.||.|||||.|||||.||.|..|||..||||||.|| ||
BL03357___tua 804 T----AATGTCATCTGGACGGGCCCCGCTGCGCCGTCAGAAGTACCAGC- 848
BSNT_05409___ 861 TTTTATGGAGCTTATCGACATTGGCATCATGCCTTATAAACAATCACCGT 910
||.||||.|..|..|.||.||.||.||||||||.|||||||..||.||.|
BL03357___tua 849 TTATATGAATGTAGTGGATATCGGTATCATGCCGTATAAACCGTCGCCAT 898
BSNT_05409___ 911 ATAATCAA-GCTGTGTTTCCACTGAAACTATTTGAATTTTTAGCGGCAGG 959
|||| ||| ||.||.|||||..|.||.||.|||||||||||.||.||.||
BL03357___tua 899 ATAA-CAATGCGGTATTTCCTTTAAAGCTGTTTGAATTTTTGGCTGCCGG 947
BSNT_05409___ 960 AAAACCTGTCGTCGGCTCT-AATCTTCCGTCAACCTCAAAAATGCAAAAG 1008
|||.||||||| |.|.|.| ||.||.||.||||| |.|||||
BL03357___tua 948 AAAGCCTGTCG-CAGGTATGAACCTCCCTTCAAC---------GGAAAAG 987
BSNT_05409___ 1009 CCGTATGTATACGAA------------TATGTAGAAGGTGATCATCCAAT 1046
|| ||.|.|.||| .||.||..|||..|..|.||...
BL03357___tua 988 --GT-TGAACAGGAACACGTTTACCGTCATTTAACAGGAAACGACCCCGC 1034
BSNT_05409___ 1047 TGATTTTATAGCAGCTTGTGAAAA-----AGTTCTCGAACAAAACGGA-G 1090
|||.||||.|||.|.|||||||.| ||.|..||.| .|| |
BL03357___tua 1035 TGAATTTACAGCGGTTTGTGAAGAGCTGGAGCTTGCGCA------TGATG 1078
BSNT_05409___ 1091 ACGAAACCTATAAAGAAATGCGCCGAAACATCGCTCGCACACAAGATTGG 1140
|.|...||.||...|||.|||||.||||.|||||.||...|..|||.|||
BL03357___tua 1079 ATGTTTCCCATGTGGAACTGCGCAGAAAGATCGCACGTGAAAGAGACTGG 1128
BSNT_05409___ 1141 AAT----------------TGCTTATTTAGACAAATTATGAAAT---ATA 1171
.|| ||||| ||.|||| ||||.| ||
BL03357___tua 1129 CATCATCTATTTTTAATGATGCTT-----GATAAAT--TGAACTTGAAT- 1170
BSNT_05409___ 1172 CAGGGATTCAAAAACATGCGTAG 1194
|.||||.||.||
BL03357___tua 1171 -AAGGATGCATAA---------- 1182
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