Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01938 and BL03346
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_01938___yjbK.1.5803.seq
# -bsequence dna-align/BL03346___yjbK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01938___yjbK-BL03346___yjbK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01938___yjbK-BL03346___yjbK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01938___yjbK
# 2: BL03346___yjbK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 635
# Identity: 403/635 (63.5%)
# Similarity: 403/635 (63.5%)
# Gaps: 124/635 (19.5%)
# Score: 1188.5
#
#
#=======================================
BSNT_01938___ 1 ATGAGCCAAGAAATTGAAATCGAATTTAAAAACATGCTGACCAAACAAGA 50
||||||||.|||.|||||||||||||||||||.||||||||.|||.||||
BL03346___yjb 1 ATGAGCCAGGAACTTGAAATCGAATTTAAAAATATGCTGACAAAAAAAGA 50
BSNT_01938___ 51 ATT---CAAAAACA--------TAGCAGCGGCA-----CTCC-AGCTGAC 83
||| .||||.|| ||.|| | |||| |||
BL03346___yjb 51 ATTTGAGAAAATCAAATCATATTATCA-----ATTTTCCTCCGAGC---- 91
BSNT_01938___ 84 AGAAAAAGATTTTACAGATCAAAAGAATCATTATTTTGATACAGACAG-- 131
||..|.|||.| |||||.||.|||||||..||||| |
BL03346___yjb 92 -----AATTTGTTATA---CAAAAAAACCATTATTACGATAC-----GCC 128
BSNT_01938___ 132 ---CTTCGCGCTGAAACAAAAACAAGCTGCGCTTCGTATCCGCAGAAAA- 177
||||.|..|.|||.|||||..||||||.||..|.||.||| |||||
BL03346___yjb 129 TTCCTTCTCTTTAAAAGAAAAAGGAGCTGCCCTAAGAATTCGC-GAAAAG 177
BSNT_01938___ 178 ----AACGGAAAGTATGTCCTTACATTAAAGGAGCCGGCTGATGTGGGGC 223
|.|| .|.||||||.||||||||.||.|||||...|||.||.|
BL03346___yjb 178 CAGCAGCG----ATTTGTCCTGACATTAAAAGAACCGGCGCCTGTCGGAC 223
BSNT_01938___ 224 TTCTGGAAACGCACCAGCAGCTTTCAGA---GGTATCAGATCTCGCTGGA 270
|..|||||||.||||||.|||| || ||.|.| |||.|
BL03346___yjb 224 TGATGGAAACCCACCAGGAGCT----GACCCGGAAGC--------CTGAA 261
BSNT_01938___ 271 TT-------TTCA--GTTCCCGAGGGCCCTGTGAAGGACCAGCTGCACAA 311
.| |||| .||||..|.||.||.||..|.||.|..||| ||
BL03346___yjb 262 ATCGAAACGTTCATGATTCCGCATGGGCCGGTATACGATCGTCTG---AA 308
BSNT_01938___ 312 GCTTC---AGATCGATACGGA--TGCCATTCAATACTTT--GGATCTTTA 354
||.|| ..||.||..|||| .|| || ||.|||| |||.|..|.
BL03346___yjb 309 GCGTCTCGGCATTGAAGCGGACGAGC---TC-ATCCTTTTCGGAACGCTT 354
BSNT_01938___ 355 GCAACAAACCGTGCGGAAAAAGAAA------CAGAAAAAGGCTTAATAGT 398
||.||||.||||||.|||||| ||| ||| ||||||||.||
BL03346___yjb 355 GCGACAAGCCGTGCAGAAAAA-AAATTGCCGCAG-----GGCTTAATTGT 398
BSNT_01938___ 399 TTTAGACCACAGCCGATATTTAAATAAAGAGGACTATGAAATTGAATTTG 448
|||.||.|||||||||||.||||....|||.||||.||||||.|||||.|
BL03346___yjb 399 TTTGGATCACAGCCGATACTTAATGGTAGAAGACTTTGAAATCGAATTCG 448
BSNT_01938___ 449 AGGCGGCGGATTGGCATGAGGGCAGAAAA---GCTTTC-GAGAAGCTGCT 494
|.|.|.|||||| ||||..||.||||| |.|||| ..||| |||||
BL03346___yjb 449 AAGTGACGGATT---ATGAACGCGGAAAACGGGATTTCTCTGAA-CTGCT 494
BSNT_01938___ 495 TCAGCAA---TTCAGCATTCCTCAGCGCGAAACCAAAAATAAAATTCTGC 541
|.|| |||.||||.|||.||||.|||||||||||.|||||..|.|
BL03346___yjb 495 ---GAAATCGTTCGGCATCCCTGAGCGTGAAACCAAAAACAAAATCGTCC 541
BSNT_01938___ 542 GTTTTTATGAAGAAAAAC-GAAAGTCTAT--ATAA 573
|.||||||||..|||||| .|||| || ||||
BL03346___yjb 542 GATTTTATGAGCAAAAACTTAAAG---ATCAATAA 573
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