Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03239 and BL03307
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_03239___ypnP.1.5803.seq
# -bsequence dna-align/BL03307___ypnP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03239___ypnP-BL03307___ypnP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03239___ypnP-BL03307___ypnP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03239___ypnP
# 2: BL03307___ypnP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1433
# Identity: 943/1433 (65.8%)
# Similarity: 943/1433 (65.8%)
# Gaps: 196/1433 (13.7%)
# Score: 2918.5
#
#
#=======================================
BSNT_03239___ 1 ATGAAAGCATAC-GATTTTACACAGGGGAACGTGCTGAAACAGCTTGTAC 49
|||||| || ||.||||||.|.||.||.||..|.||||||||.|| |
BL03307___ypn 1 ATGAAA----ACGGACTTTACATACGGAAATGTATTTAAACAGCTGGT-C 45
BSNT_03239___ 50 TGTTT-----------TCAAT---GCCTATTATGCTTGGAAACGCATTGC 85
|.||| |||.| |||.|| ||| ||||
BL03307___ypn 46 TATTTTTCCGGACCGATCATTTTAGCCAAT----CTT---------TTGC 82
BSNT_03239___ 86 AGGTTTCCTTTCAATTTATAGACAGCTTGTGGATCGGCAATTTACTGGGG 135
||.||||.||.|||||..|.||||||||||||.||||.|||.|.||.||.
BL03307___ypn 83 AGATTTCATTCCAATTCGTCGACAGCTTGTGGGTCGGAAATCTGCTCGGA 132
BSNT_03239___ 136 GCAAAGGCCCTTGGGGCAGCCGCGGTATCAAGCACGATTGTTTTGACCGT 185
|||||.||.|||||.||.||.||.||.|||.|.|||.||.|.||.||.||
BL03307___ypn 133 GCAAAAGCTCTTGGTGCTGCGGCCGTCTCAGGAACGGTTTTCTTTACGGT 182
BSNT_03239___ 186 GCTGTCTTTTATTTTGGGCCTTAACAATGCGACGTTAACCATTTTATCTC 235
||||||.||..|.||||||.|.|||||||||.||.|.||.|||.|..|.|
BL03307___ypn 183 GCTGTCGTTCGTATTGGGCGTCAACAATGCGGCGCTGACGATTCTTGCGC 232
BSNT_03239___ 236 AGCAAAAAGGAAAAGATGATGTAAAAGGAATGGCGTCGTATATTAACGCT 285
|||||||||||||||..|||..|||.|||.||||.||.|||.|.|||||.
BL03307___ypn 233 AGCAAAAAGGAAAAGGGGATAAAAAGGGACTGGCATCATATGTAAACGCG 282
BSNT_03239___ 286 TTTGTTGTTTTATTAACAGGC-CTAAGCATCGGATTCGGCGCGG-----C 329
|||||.|||.|..|.|| ||| .|.|| ||.||| ||.||| .
BL03307___ypn 283 TTTGTCGTTCTGATGAC-GGCGATGAG---CGTATT--GCTCGGGGTTAT 326
BSNT_03239___ 330 CGGTTTTTTTCTCTCAGAGCTTTTGCT---GCGTCTTCTAAAAACACC-G 375
|||.|.||||.||.||||||.|||||| ||..|||| ||||.|| |
BL03307___ypn 327 CGGCTATTTTTTCACAGAGCCTTTGCTCTCGCTACTTC---AAACGCCTG 373
BSNT_03239___ 376 GAGTCAAT------GATACCGCTTGCTGAGACG-----TATTTACAGATT 414
| |||| ||| ||| |.|| |||||...||||
BL03307___ypn 374 G---CAATATGATGGAT-----TTG----GCCGTAAGCTATTTGAGGATT 411
BSNT_03239___ 415 CAATTTATCGGCATTTTATTTTTGTTTGGTTATAACTTTATCAGTACTGT 464
||.||||||||.|||.|||||||.||.||.|||||.||.||||||||.||
BL03307___ypn 412 CATTTTATCGGGATTATATTTTTATTCGGCTATAATTTCATCAGTACAGT 461
BSNT_03239___ 465 GCTTCGTGCGCTGGGCGACAG-CAAGACACCTCTCCGGTTTATTGCGTT- 512
..|..|.|||.|.|||||||| ||| |||||| |||||||
BL03307___ypn 462 ATTAAGAGCGGTCGGCGACAGTCAA-ACACCT----------TTGCGTTT 500
BSNT_03239___ 513 --TGCTGTTG-------TACTGAATACAGTGCTTGCG--CCGCTCTTTAT 551
|.|||||| |.||||| .|.||.|.|| | |||||.|||||
BL03307___ypn 501 CGTCCTGTTGGCCGTCATCCTGAA-CCTGTTCATG-GATCCGCTGTTTAT 548
BSNT_03239___ 552 TTCTGTGTTCCGCATGGGAATAGCGGGAGCGGCTTATTCAACGATTTTGT 601
.||.||.|||..|.|.|||||.||.||||||||.|||.||||..|..|||
BL03307___ypn 549 CTCGGTATTCAACCTCGGAATTGCCGGAGCGGCCTATGCAACCGTCGTGT 598
BSNT_03239___ 602 CACAGGGCATTGCGTTTTTGTATGGGTTGTTTTATGTGGTCAAACACAAG 651
|.||.||.|||||.|||.|.||.||..||.|.|||..|||.|.|.|..||
BL03307___ypn 599 CCCAAGGGATTGCTTTTATTTACGGAGTGGTCTATACGGTGAGAAAGCAG 648
BSNT_03239___ 652 CTTGTGCCATTCTCAA---------TTCCGAGAAT-GCCCAAGTGGGA-A 690
|||||.|||||.|||| |||| || || |||.| |
BL03307___ypn 649 CTTGTTCCATTTTCAAAGCCGGCGCTTCC----ATCGC-----TGGCAGA 689
BSNT_03239___ 691 GA-GTCCGCGCTGATTTTGAAACTCGGGATTCCGGCAGGTCTGCAGATGA 739
|| ||||| |.||||||||.|||||..|.||.||.||..||||.||||
BL03307___ypn 690 GACGTCCG---TCATTTTGAAGCTCGGAGTGCCTGCCGGCTTGCAAATGA 736
BSNT_03239___ 740 TGGTGATTACAGGCGGTATGATGGCGATTATGAGTGTTGTTAACTCATAC 789
||||||||.|||||||...|||||||||||||||.|||||.||.||||..
BL03307___ypn 737 TGGTGATTTCAGGCGGCTCGATGGCGATTATGAGCGTTGTCAATTCATTT 786
BSNT_03239___ 790 GGGGATCACGTGGTATCAGGCTTTGGCGCGGTGCAGCGGCTTGATAGTAT 839
||.||...|||.||.|||||.|||||||||||.|||||||||||.||..|
BL03307___ypn 787 GGAGAAAGCGTCGTGTCAGGGTTTGGCGCGGTACAGCGGCTTGACAGCCT 836
BSNT_03239___ 840 CATCACGCTTCCAGCAATGGCTGCCGGTACGGCCGTCAACAGTATGGCAG 889
..|.|..||.|||||.|||||...|||.|||||.||||||||||||||.|
BL03307___ypn 837 GCTGATTCTCCCAGCGATGGCCATCGGCACGGCTGTCAACAGTATGGCTG 886
BSNT_03239___ 890 GGCAAAATATTGGAATCGG-----------AAACGAAAAAAGAGTGGGAA 928
|.||||...|.||||.||| ..||||||||
BL03307___ypn 887 GCCAAACCTTCGGAAGCGGCGACATGGAGCGTACGAAAAA---------- 926
BSNT_03239___ 929 CAATTG-CAAGGCTA-GGTGTGGTGGCTGTTATTTCCTGCATGCTGGTGA 976
|||.| ||| ||| ||.|| |..||||.|||||| ||.|..||.
BL03307___ypn 927 -AATCGCCAA--CTACGGCGT-----CATTTATGTCCTGC-TGTTTATGG 967
BSNT_03239___ 977 TTGCGGTTATGATTTGGGTATTTGGTAAA---TATCTC---ATAAGGTTA 1020
.|||.||.|..|....|.|||||...|.| ||||.| .|.|||.|.
BL03307___ypn 968 CTGCCGTCAGCACCGCGATATTTCTGACAGGCTATCACGCGGTCAGGCTG 1017
BSNT_03239___ 1021 TTTATCA--GTGAGCCTGATGCGGTCGCATTTGGTGAACAATATTTGAAG 1068
||||| | |..|||| |||.|.|.||||||.||.|||.|.|||||.||.
BL03307___ypn 1018 TTTAT-ATCGGAAGCC-GATTCAGCCGCATTCGGGGAAGAGTATTTAAAA 1065
BSNT_03239___ 1069 TGGATCGCGTTTTTCTACCCTTTTATTGGGATTAATTTTGTGCTGAACGG 1118
..|||.||.||||||||.||.|||||.||.|||||.||||||.|||||||
BL03307___ypn 1066 ACGATTGCTTTTTTCTATCCGTTTATCGGAATTAACTTTGTGTTGAACGG 1115
BSNT_03239___ 1119 AATCGTCAGGGCCGCGGGAGCGATGCTGCAGGTTCTGGTATTAAATTTGA 1168
..|.||.|||||.||.|||||||||.|.||..||.||||..|.||..|||
BL03307___ypn 1116 TGTTGTAAGGGCAGCCGGAGCGATGTTTCAAATTTTGGTGCTGAACGTGA 1165
BSNT_03239___ 1169 TCTCGTTTTGGGTGTTGAGATATCCTTTCACAGCTCTATTTTCAGCTTGG 1218
|.||.|||||||..|||.|.|||||.||.|||..||||||||||...|||
BL03307___ypn 1166 TTTCTTTTTGGGCTTTGCGCTATCCGTTTACATATCTATTTTCAAAGTGG 1215
BSNT_03239___ 1219 CTTGGACAAAAAGGAATCGGGCTTGGAATCGGAATGAGTTTTTTATTTAG 1268
|||||..|.||.||.||.|.|||.||.|||||||||||.|||.|..|.||
BL03307___ypn 1216 CTTGGCGAGAACGGCATAGCGCTGGGCATCGGAATGAGCTTTATGCTGAG 1265
BSNT_03239___ 1269 CAG-CTGCGCGGCATTTTTGTATTATAGATATGGCCGCT--GGAAAGCAA 1315
||| ||| .|.||.|||||.||||| ||||| ||.|||
BL03307___ypn 1266 CAGCCTG-ACCGCCTTTTTATATTA---------CCGCTACGGGAAG--- 1302
BSNT_03239___ 1316 T-GAAG---------CTGTTTACTGAAAAATAA 1338
| |||| ||.|| ||||||||.|
BL03307___ypn 1303 TGGAAGCACCTCGTTCTATT---TGAAAAATGA 1332
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