Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03254 and BL03299

See Amino acid alignment / Visit BSNT_03254 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:55
# Commandline: needle
#    -asequence dna-align/BSNT_03254___ypjQ.1.5803.seq
#    -bsequence dna-align/BL03299___ypjQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03254___ypjQ-BL03299___ypjQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03254___ypjQ-BL03299___ypjQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03254___ypjQ
# 2: BL03299___ypjQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 558
# Identity:     403/558 (72.2%)
# Similarity:   403/558 (72.2%)
# Gaps:          33/558 ( 5.9%)
# Score: 1444.0
# 
#
#=======================================

BSNT_03254___      1 ATGAAAAAGTACACAATGAATGAAATGGTCGATATAACAAAGGATATGCT     50
                     |||||.|||||.||.||||||||||||||..|..||||.||..|||||||
BL03299___ypj      1 ATGAAGAAGTATACGATGAATGAAATGGTGCACTTAACGAAAAATATGCT     50

BSNT_03254___     51 GAACAAACGGGGCGTTATGATAGAAGATATTGCACGGATTGTTCAAAAAC    100
                     |||..|.||.||.|||..|||.||.|||||.||.|.|||.||.|||||.|
BL03299___ypj     51 GAATGAGCGCGGGGTTGCGATTGAGGATATCGCGCTGATCGTACAAAAGC    100

BSNT_03254___    101 TTCAGGAAAAATACAATCCAAATCTGCCGCTCAGTGTTTGCATGGAGAAT    150
                     |.||||||||||||.||||..||||.|||||...|||.|||||.||.|||
BL03299___ypj    101 TGCAGGAAAAATACCATCCTGATCTCCCGCTTGATGTATGCATTGAAAAT    150

BSNT_03254___    151 GTAGAAAAAGTCCTGAACAAACGTGAAATTATTCATGCTGTTTTGACAGG    200
                     ||.|||||.|||.|.||.||..|.|||||..|||||||.|||||.||.||
BL03299___ypj    151 GTCGAAAAGGTCTTAAATAAGAGGGAAATCGTTCATGCCGTTTTAACGGG    200

BSNT_03254___    201 CCTTGCACTCGATCAGCTTGCAGAACAGAAGTTTCTCCCCGAACCGCTGC    250
                     ..|.||.||.||.|||||.||.||..|.|||.|..|.||.||||||||.|
BL03299___ypj    201 GATAGCGCTTGACCAGCTGGCCGAGAAAAAGCTGTTGCCTGAACCGCTTC    250

BSNT_03254___    251 AGCACCTTGTTGAAACGGATGAACCGCTTTACGGCATAGATGAAATTATC    300
                     |..|..|.||.||||||||.|||||.||||||||.||.||.||.||||||
BL03299___ypj    251 AATATTTGGTCGAAACGGACGAACCCCTTTACGGGATCGACGAGATTATC    300

BSNT_03254___    301 CCGCTTTCCATCGTTAATGTGTACGGGTCGATCGGTTTGACCAATTTCGG    350
                     ||.||.||.|||||.||.||.|||||.||||||||.|||||.||.|||||
BL03299___ypj    301 CCTCTATCTATCGTAAACGTCTACGGTTCGATCGGCTTGACGAACTTCGG    350

BSNT_03254___    351 TTATTTGGATAAAGAGAAGATT-GGAATTATTAAGGAACTTGATGAAAGT    399
                     .|||.|||||||||| ||.||| ||.||.|||||.|||||.||.||..||
BL03299___ypj    351 CTATCTGGATAAAGA-AAAATTCGGCATCATTAAAGAACTGGACGACTGT    399

BSNT_03254___    400 CCAGACGGT---ATTCACACCTTTTTGGATGATATTGTGGCAGCTCTTGC    446
                     ||.||||.|   .||||.||.||..|.||||||||.||.||||||.|.||
BL03299___ypj    400 CCGGACGATGAGGTTCATACGTTCCTTGATGATATCGTCGCAGCTTTGGC    449

BSNT_03254___    447 TGCAGCAGCGGCGAGCAGAATTGCACATACGCATCAGGATCTGCAAGATG    496
                     .|||||.|||||.|||.|||||||.|||.|||||||||||||..|.||||
BL03299___ypj    450 GGCAGCGGCGGCAAGCCGAATTGCCCATTCGCATCAGGATCTTGAGGATG    499

BSNT_03254___    497 AAG-------AAAAAGAACAG-------GA------TGAAAAGCCTGTCG    526
                     |||       |.|.|||||||       ||      .||||||||     
BL03299___ypj    500 AAGTGCAGGAAGAGAGAACAGACGGACAGAGCGTTGCGAAAAGCC-----    544

BSNT_03254___    527 TCAGCTGA    534
                        |||||
BL03299___ypj    545 ---GCTGA    549


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