Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03255 and BL03298
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_03255___ypjP.1.5803.seq
# -bsequence dna-align/BL03298___ypjP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03255___ypjP-BL03298___ypjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03255___ypjP-BL03298___ypjP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03255___ypjP
# 2: BL03298___ypjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 642
# Identity: 447/642 (69.6%)
# Similarity: 447/642 (69.6%)
# Gaps: 75/642 (11.7%)
# Score: 1521.0
#
#
#=======================================
BSNT_03255___ 1 ------TTGTGGATGAGAAAGACCCTTGTGGTTTTATTTACCATTGTAAC 44
.|||||||||||||..|.|||||.|..||||||||.||||.|||
BL03298___ypj 1 ATGAAGATGTGGATGAGAAAAGCGCTTGTCGCATTATTTACAATTGCAAC 50
BSNT_03255___ 45 GTTCGGGCTCGTATCTCCTCCGGCTGCCCTTATGGCGGACAAGCCTTCCG 94
||||||.||.|||||||||||.||.||..|.||||||||||||||
BL03298___ypj 51 GTTCGGCCTTGTATCTCCTCCTGCGGCATTGATGGCGGACAAGCC----- 95
BSNT_03255___ 95 GACAGCCGAGCAGTCTTGAGC-----AGAAT---GATTACACCGCTTTTT 136
.||| ||||| || .|||| ||||| || ||.||.|||.|||
BL03298___ypj 96 -GCAG--GAGCA-TC-AGAGCGTGAAAGAATCCGGA-TATACGGCTGTTT 139
BSNT_03255___ 137 ATGATGAGCATGA----CCTGTACGA---TGATGAGTCGGATGACAGGCG 179
||.|..||||.|| || ||| |||| ||.||| ||||
BL03298___ypj 140 ATCAAAAGCAAGAAGAGCC----CGAGCTTGAT------GAAGAC-GGCG 178
BSNT_03255___ 180 AGATCCTGAACTGCTT--TTTCAATCGTACA---AGGAACAGCTCCTTGA 224
| |||| ||.| ||| |||.|..|.|||| |.||||.||||..|||
BL03298___ypj 179 A-ATCC--AAAT-CTTCATTTGACACCTACAGGGATGAACTGCTCAATGA 224
BSNT_03255___ 225 CAGCGCTGAGGATCAGTCCTTTTTAAAATTCGGCAGCAGAATCGCTCCTG 274
.|||||.||||..||.||..||||||||||||||||.||..|.||.|
BL03298___ypj 225 ---AGCTGAAGATCTATCATTCGTAAAATTCGGCAGCAGGATATCGCCGG 271
BSNT_03255___ 275 TCATTGAGGATGACTATCGGAAAGAGATCCTGCCAAAAATCGAAAAAGTG 324
|||||||.||.||.||..||.||||..|.||.|||||.|||||
BL03298___ypj 272 TCATTGAAGACGAGTACAGGGAAGAAGTGCTTCCAAAGATCGA------- 314
BSNT_03255___ 325 ATTAGTGATTAT--TTAGC--------GACATTGCAAGATGATGAGGCGT 364
.|.|||.|| |.||| ||||.||||.||..||||.||.|
BL03298___ypj 315 ---GGAGATCATCGTCAGCCATCTCATGACAATGCAGGACAATGACGCTT 361
BSNT_03255___ 365 ACCAAGATGTTGTGATCTCAAGCATGCCTTCAGCGGGCAAAACGGAAAAA 414
||||.|||.||||.||.||.|..|.|||..|.|||||.||..||||.|.|
BL03298___ypj 362 ACCAGGATCTTGTCATTTCCAAAACGCCGACGGCGGGGAAGTCGGAGAGA 411
BSNT_03255___ 415 ATTTTCAACGTTTACAATCGGACAACTGGAGAAGATCTTCTCAGATTCCA 464
||.|||.|||||||||||||||.|||.||.||||||.|.||.||.|||||
BL03298___ypj 412 ATCTTCCACGTTTACAATCGGAAAACGGGGGAAGATGTGCTAAGGTTCCA 461
BSNT_03255___ 465 TGTGCGAAGAGACCACCCGCCTCATGACGGCTACTGGTTTAATTTTCATT 514
||||||.||.|||.|.|||||.|||.|.||.|||||||||||.|||||||
BL03298___ypj 462 TGTGCGCAGGGACAAGCCGCCGCATAAAGGGTACTGGTTTAACTTTCATT 511
BSNT_03255___ 515 ATCATACAGCAGAAGATGGATTTCAATCACATCATGAGCTTGGGAGTATT 564
|.|||||.||.|||||.||.||||||..||||||.||.||.||.||.|||
BL03298___ypj 512 ACCATACTGCCGAAGACGGCTTTCAAAAACATCACGATCTCGGAAGCATT 561
BSNT_03255___ 565 TACTGGGACCGCAACACGCCTCCCAACTGGATGAGTGCCTAA 606
||||||||||||||.||.||.||.||||||||||||..||||
BL03298___ypj 562 TACTGGGACCGCAATACACCGCCTAACTGGATGAGTCACTAA 603
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