Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04457 and BL03291

See Amino acid alignment / Visit BSNT_04457 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_04457___ytlD.1.5803.seq
#    -bsequence dna-align/BL03291___ytlD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04457___ytlD-BL03291___ytlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04457___ytlD-BL03291___ytlD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04457___ytlD
# 2: BL03291___ytlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     605/837 (72.3%)
# Similarity:   605/837 (72.3%)
# Gaps:          42/837 ( 5.0%)
# Score: 2073.0
# 
#
#=======================================

BSNT_04457___      1 TTGAGAAACAGCAAA-----GAAACCA----TTGATCTGCTTCACGAGCA     41
                     |||   ||||.||||     |||||||    ||||..|.|||||.|||..
BL03291___ytl      1 TTG---AACAACAAACATCCGAAACCAAAAGTTGACTTCCTTCATGAGGC     47

BSNT_04457___     42 GTATCAATTCAAACAGAAAAAG---GAAAAGTGGAAGGTCCATTCCTTTC     88
                     .|.|   ||.||..||.|..||   |||||..||..|||||..|..||||
BL03291___ytl     48 TTTT---TTAAAGGAGCAGCAGGCCGAAAAAAGGCGGGTCCGCTTTTTTC     94

BSNT_04457___     89 AGCTTGCCATATTTATTCTCTTTTTCTCGGGCTGGGAAATCTCCAGCAGG    138
                     |..|.||.||.||.||..|.||.||.|||...|||||||.|.|.|||.|.
BL03291___ytl     95 AAATCGCGATTTTCATCGTTTTCTTTTCGCTGTGGGAAACCGCAAGCCGT    144

BSNT_04457___    139 CAGGGCTGGATCGATCCGCTGATCTTCAGCTCTCCATCAGCTGTGT-GGC    187
                     |.||..|||||||||||||||||||||||||||||.|||||.||.| |||
BL03291___ytl    145 CTGGCATGGATCGATCCGCTGATCTTCAGCTCTCCTTCAGCCGTCTGGGC    194

BSNT_04457___    188 GATTATTGCTGGAGAAACTTGGTGACGGTTCTTTACTGTCACACATCGGC    237
                     |.|| ||.||.||.|||.|.||.|||||.||.||.|.|..|||.|||||.
BL03291___ytl    195 GCTT-TTCCTCGAAAAAATGGGAGACGGATCATTGCCGGGACATATCGGT    243

BSNT_04457___    238 GTCACTTTATTTGAAACGGTGCTTGGCTTTTTGCTCGGGACGTTTATGGG    287
                     ||.||..||||||||||..|.||.||||||.||..|||.||.||..|.||
BL03291___ytl    244 GTAACCGTATTTGAAACCATCCTCGGCTTTCTGGCCGGAACATTGCTTGG    293

BSNT_04457___    288 CACGTGCCTAGCCGCTTTGTTATGGTGG-TCTAACCGA--CTTGCCAGAA    334
                     .||.|..||||||||..|.||||||||| ||   ||||  ||..|||.||
BL03291___ytl    294 AACTTTTCTAGCCGCCCTCTTATGGTGGTTC---CCGAGGCTCTCCAAAA    340

BSNT_04457___    335 TTTTAGATCCGTATCTTGTGATTTTGAACGCAATGCCGAAAGTGGCCCTG    384
                     |.|||||||||||||||||..|.||.||.||.||||||||||||||.|||
BL03291___ytl    341 TATTAGATCCGTATCTTGTCGTCTTAAATGCGATGCCGAAAGTGGCGCTG    390

BSNT_04457___    385 GGCCCGATCCTGATTGTCGCGCTCGGTCCCAGTTTTATCAGCATCATTGC    434
                     ||.||.||.||.||.||.|||.||||.|||||.||.|..|||||.|||||
BL03291___ytl    391 GGTCCCATTCTCATCGTTGCGATCGGCCCCAGCTTGACGAGCATTATTGC    440

BSNT_04457___    435 GATGGGAGCCATCATCAGCGTCATTATCACAACCATCGTTGTCTATACCG    484
                     .|||||.||||||||||||||.||.||.||.||.|||||.||||||||..
BL03291___ytl    441 AATGGGCGCCATCATCAGCGTTATCATTACGACTATCGTCGTCTATACGT    490

BSNT_04457___    485 CCTTCCAGGAGGTCGACGAAAACTATACGAAAGTCATGAAAACATTCGGC    534
                     ||||.||.||..|.||.|||||||||...|||||.|||||||||||||||
BL03291___ytl    491 CCTTTCAAGAAATTGATGAAAACTATTTAAAAGTGATGAAAACATTCGGC    540

BSNT_04457___    535 GCAA--AAAAGTGGGTTATTTTTAAAGAAGTCATACTGCCTGCATCCTCC    582
                     ||.|  |||.|.|.|  |||||.|||||||||||..||||.||.|||...
BL03291___ytl    541 GCTACGAAACGCGAG--ATTTTCAAAGAAGTCATTTTGCCCGCTTCCATT    588

BSNT_04457___    583 CCCGCGATTATTTCAACACTAAAAGTGAACGTCGG-TTTATCATGGGTTG    631
                     ||..||||.||.||.|||||.||.||.||.||||| ||.|.| |||||.|
BL03291___ytl    589 CCGACGATCATATCTACACTGAAGGTCAATGTCGGCTTGAGC-TGGGTCG    637

BSNT_04457___    632 GCGTTATTGTAGGGGAATTCCTCGTTTCG----AAGGTCGGATTAGGATA    677
                     |.||.||.|||||.|||||..|.||.|||    ||||.|    |.||.||
BL03291___ytl    638 GTGTCATCGTAGGAGAATTTTTAGTATCGGCTCAAGGCC----TCGGCTA    683

BSNT_04457___    678 TATGATTATTTACGGATTCCAAGTCTTCAATTTTACACTCGTCTTCTTAA    727
                     ||||||.||.|||||.||.||||||||.|||||.|..||||||.|..|.|
BL03291___ytl    684 TATGATCATCTACGGCTTTCAAGTCTTTAATTTCAACCTCGTCATGCTGA    733

BSNT_04457___    728 GCCTGCTGATCATCGCCATCTTCGCCACTCTGATGTATCAGGGCGTCGAG    777
                     ||||.||||||||||||.|||||||.||..||||||||||.||.||||||
BL03291___ytl    734 GCCTCCTGATCATCGCCGTCTTCGCAACATTGATGTATCAAGGTGTCGAG    783

BSNT_04457___    778 CTGCTGGAAAAGAAA-TGGACGAAGGGGAGGACATAA    813
                     |||.||| ||||||| ||||.|||.||.||...||||
BL03291___ytl    784 CTGTTGG-AAAGAAAGTGGATGAAAGGCAGAGTATAA    819


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04457 and BL03291

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
