Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00178 and BL03261
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_00178___clpC.1.5803.seq
# -bsequence dna-align/BL03261___clpC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00178___clpC-BL03261___clpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00178___clpC-BL03261___clpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00178___clpC
# 2: BL03261___clpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2436
# Identity: 1929/2436 (79.2%)
# Similarity: 1929/2436 (79.2%)
# Gaps: 6/2436 ( 0.2%)
# Score: 7581.0
#
#
#=======================================
BSNT_00178___ 1 ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTACTGGCGCTAGC 50
|||||||||||||||||.||||||.||||.|||||||||.|||||||.||
BL03261___clp 1 ATGATGTTTGGAAGATTCACAGAAAGAGCACAAAAAGTATTGGCGCTTGC 50
BSNT_00178___ 51 ACAGGAAGAAGCACTTCGGTTAGGTCATAATAACATTGGCACTGAGCATA 100
.||.||||||||.||.||..|.||.||||||||||||||.||.||.||||
BL03261___clp 51 TCAAGAAGAAGCTCTGCGTCTGGGCCATAATAACATTGGAACAGAACATA 100
BSNT_00178___ 101 TTTTATTAGGACTGGTAAGAGAAGGAGAGGGCATTGCTGCTAAAGCTCTT 150
||.|..|.||.||.||..|.||.|||||.||.||||||||.|||||.||.
BL03261___clp 101 TTCTCCTCGGCCTTGTCCGCGAGGGAGAAGGAATTGCTGCGAAAGCGCTG 150
BSNT_00178___ 151 CAAGCGCTTGGACTCGGTTCAGATAAAATTCAGAAAGAAGTAGAAAGTTT 200
||.|||.|.||||||.|..|.||.||.|||||.||||||||.|||||..|
BL03261___clp 151 CAGGCGTTAGGACTCAGCCCTGACAAGATTCAAAAAGAAGTTGAAAGCCT 200
BSNT_00178___ 201 GATCGGGCGCGGGCAGGAAATGTCTCAAACGATTCATTATACTCCTAGAG 250
.|||||.|||||.||.||||||||.|||.||||.|||||.||.||.||||
BL03261___clp 201 CATCGGCCGCGGACAAGAAATGTCACAATCGATCCATTACACACCGAGAG 250
BSNT_00178___ 251 CTAAAAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTCGGTCAT 300
|.||.|||||.|..||..|..|.||||||||.||.|||||.||.||.||.
BL03261___clp 251 CCAAGAAAGTGACCGAATTGGCGATGGATGAAGCGAGAAAGCTTGGCCAC 300
BSNT_00178___ 301 TCTTATGTTGGAACAGAACATATTCTTCTTGGTCTGATTCGTGAAGGAGA 350
||.||.||||||||.|||||.||.||.|||||..|.||.||.|||||.||
BL03261___clp 301 TCCTACGTTGGAACTGAACACATCCTCCTTGGCTTAATCCGCGAAGGGGA 350
BSNT_00178___ 351 AGGTGTTGCTGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTAAATAAAG 400
|||||||||.||.||.||.|||||||||.|.||.|||||||||||.||||
BL03261___clp 351 AGGTGTTGCGGCAAGGGTGCTGAATAATTTAGGCGTCAGCTTAAACAAAG 400
BSNT_00178___ 401 CAAGACAGCAGGTGCTCCAGCTTCTAGGAAGTAATGAAACAGGATCATCA 450
|.||||||||.||..|.|||||..|.||.||.|||||.|..|||....|.
BL03261___clp 401 CGAGACAGCAAGTATTGCAGCTGTTGGGCAGCAATGAGAGCGGAGGCGCT 450
BSNT_00178___ 451 GCGGCAGGAACAAACAGCAATGCGAATACGCCTACTCTTGACAG-CTTGG 499
||..||||..|.|||||.|..||.||.||.||.|||.|.||||| ||| |
BL03261___clp 451 GCTTCAGGCGCCAACAGTAGCGCCAACACACCAACTTTAGACAGTCTT-G 499
BSNT_00178___ 500 CAAGAGACTTAACTGCTATTGCGAAGGAAGACAGCCTTGACCCTGTAATC 549
|..|.||..|.||.||.|||||.||.||||||||||||||.||.||.|||
BL03261___clp 500 CCCGGGATCTCACGGCGATTGCAAAAGAAGACAGCCTTGATCCCGTGATC 549
BSNT_00178___ 550 GGCAGAAGCAAGGAGATCCAGCGTGTCATTGAAGTGTTAAGCCGCAGAAC 599
|||||||||||.||.||.||.||.||.|||||||||||.|||||||||||
BL03261___clp 550 GGCAGAAGCAAAGAAATTCAACGCGTGATTGAAGTGTTGAGCCGCAGAAC 599
BSNT_00178___ 600 GAAAAACAACCCTGTTCTCATTGGGGAACCAGGTGTAGGTAAAACGGCTA 649
||||||.||||||||..|.||.|||||.||.|||||.|||||.||.||.|
BL03261___clp 600 GAAAAATAACCCTGTGTTAATCGGGGAGCCTGGTGTCGGTAAGACTGCGA 649
BSNT_00178___ 650 TCGCAGAAGGTTTGGCACAGCAAATTATCAATAATGAAGTACCCGAAATT 699
|.||.|||||..||||.|||||.||.||||||||.||||||||.||.|||
BL03261___clp 650 TTGCCGAAGGCCTGGCCCAGCAGATCATCAATAACGAAGTACCGGAGATT 699
BSNT_00178___ 700 TTGCGTGATAAACGTGTGATGACATTAGACATGGGAACAGTTGTTGCCGG 749
||.||.||.||.||.||.||||||.|.||.||||||||.|||||.|||||
BL03261___clp 700 TTACGCGACAAGCGCGTCATGACACTTGATATGGGAACGGTTGTCGCCGG 749
BSNT_00178___ 750 CACAAAATACCGCGGAGAATTTGAGGATCGCCTGAAGAAGGTCATGGATG 799
|||.|||||.|||||.||||||||.||.||||||||.||.||.|||||.|
BL03261___clp 750 CACGAAATATCGCGGTGAATTTGAAGACCGCCTGAAAAAAGTGATGGACG 799
BSNT_00178___ 800 AAATTCGCCAGGCAGGAAATATCATTCTATTCATCGATGAGCTCCATACA 849
|||||||.||.||.|||||||||||.||.||||||||||||||.|||||.
BL03261___clp 800 AAATTCGTCAAGCGGGAAATATCATCCTCTTCATCGATGAGCTGCATACT 849
BSNT_00178___ 850 TTAATCGGGGCAGGCGGAGCAGAAGGTGCTATTGATGCATCTAATATTTT 899
.|.|||||.||.||.|||||.|||||.||.||.|||||.||.|||||..|
BL03261___clp 850 CTCATCGGAGCCGGAGGAGCGGAAGGGGCCATCGATGCCTCCAATATCCT 899
BSNT_00178___ 900 AAAACCTTCACTTGCTCGTGGCGAACTCCAATGTATTGGTGCAACGACTC 949
.|||||.||.||.||.||.||.||.||.|||||.||.||.||.||.||.|
BL03261___clp 900 TAAACCGTCGCTGGCGCGCGGAGAGCTGCAATGCATCGGGGCGACAACCC 949
BSNT_00178___ 950 TTGATGAGTACCGTAAATATATTGAAAAAGATGCAGCACTGGAACGCCGT 999
|||||||.|||||.|||||.||||||||||||||.|||||.|||||.|||
BL03261___clp 950 TTGATGAATACCGCAAATACATTGAAAAAGATGCTGCACTAGAACGGCGT 999
BSNT_00178___ 1000 TTTCAGCCGATTCAGGTTGATCAGCCATCTGTAGATGAAAGTATTCAAAT 1049
||||||||||||||||||||.|||||.|||...||.|||||.||||||||
BL03261___clp 1000 TTTCAGCCGATTCAGGTTGACCAGCCGTCTCCTGAAGAAAGCATTCAAAT 1049
BSNT_00178___ 1050 TTTACAAGGTCTGCGTGACAGATACGAAGCCCACCACCGCGTTTCTATCA 1099
.||..||||.||..|.|||.|.||.||||||||.||||||||.||.||.|
BL03261___clp 1050 ATTGAAAGGGCTCAGAGACCGCTATGAAGCCCATCACCGCGTATCGATTA 1099
BSNT_00178___ 1100 CTGATGATGCCATTGAAGCTGCGGTTAAGCTTTCTGACAGATATATTTCT 1149
|.|||||.||.||.|||||.||.||.|||||.||.|||.|.||.|||||.
BL03261___clp 1100 CGGATGAAGCGATCGAAGCGGCAGTAAAGCTGTCAGACCGCTACATTTCG 1149
BSNT_00178___ 1150 GACCGCTTCCTTCCGGATAAAGCAATTGACTTGATCGATGAAGCAGGTTC 1199
|||||.||.||.||.||.||.||.||.|||||.|||||||||||.||.||
BL03261___clp 1150 GACCGTTTTCTGCCTGACAAGGCGATCGACTTAATCGATGAAGCCGGCTC 1199
BSNT_00178___ 1200 AAAGGTGAGACTGCGCTCATTTACAACGCCTCCTAACTTAAAAGAGCTTG 1249
||||||.||||||||.|||||.||||||||||||||||||||||||||||
BL03261___clp 1200 AAAGGTTAGACTGCGTTCATTCACAACGCCTCCTAACTTAAAAGAGCTTG 1249
BSNT_00178___ 1250 AGCAGAAGCTTGATGAGGTTCGTAAAGAGAAGGATGCGGCAGTGCAAAGC 1299
|.||.||||||||||||||..|.|||||.||.|||||.||.||.||||||
BL03261___clp 1250 AACAAAAGCTTGATGAGGTAAGGAAAGAAAAAGATGCCGCTGTTCAAAGC 1299
BSNT_00178___ 1300 CAAGAGTTTGAAAAAGCTGCTTCCTTGCGTGATACTGAACAACGCCTGCG 1349
||.||.||.||||||||.||.||.||.||||||||.||.||.|||.||||
BL03261___clp 1300 CAGGAATTCGAAAAAGCAGCGTCTTTACGTGATACGGAGCAGCGCTTGCG 1349
BSNT_00178___ 1350 CGAGCAAGTAGAGGATACGAAGAAATCATGGAAAGAGAAGCAAGGGCAGG 1399
.||.||.||.||.||.||.||||||.|.||||||||.||||||||.||.|
BL03261___clp 1350 TGAACAGGTCGAAGAAACCAAGAAAACCTGGAAAGAAAAGCAAGGTCAAG 1399
BSNT_00178___ 1400 AAAACTCAGAGGTTACTGTGGATGATATTGCGATGGTTGTATCCAGCTGG 1449
||||.||.||.||.||.||.||.||||||||.|||||||||||.||||||
BL03261___clp 1400 AAAATTCCGAAGTGACCGTCGACGATATTGCAATGGTTGTATCAAGCTGG 1449
BSNT_00178___ 1450 ACCGGTGTGCCTGTATCTAAAATCGCCCAAACTGAAACTGATAAGCTTCT 1499
|||||.|||||.||.||.|||||.||.||.||.|||||.||.||..|.||
BL03261___clp 1450 ACCGGAGTGCCGGTTTCCAAAATTGCGCAGACCGAAACAGACAAATTGCT 1499
BSNT_00178___ 1500 CAATATGGAAAACATTCTTCATTCCCGCGTCATCGGCCAGGATGAAGCAG 1549
.||.|||||.|.||||||||||||||||||.||||||||||||||.||.|
BL03261___clp 1500 GAACATGGAGAGCATTCTTCATTCCCGCGTTATCGGCCAGGATGAGGCTG 1549
BSNT_00178___ 1550 TTGTAGCTGTTGCAAAAGCCGTCAGACGTGCGAGAGCAGGATTGAAAGAT 1599
|.||.||.|||||||||||.||||||||.|||.|.||.||.||.||||||
BL03261___clp 1550 TCGTTGCAGTTGCAAAAGCAGTCAGACGCGCGCGTGCCGGCTTAAAAGAT 1599
BSNT_00178___ 1600 CCTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTAGG 1649
||.|||||.||.|||||.||.||.||||||.|.|||||.|||||.|||||
BL03261___clp 1600 CCAAAACGTCCTATCGGTTCGTTTATTTTCCTTGGCCCAACAGGCGTAGG 1649
BSNT_00178___ 1650 TAAAACAGAGCTTGCACGAGCACTCGCTGAATCCATTTTTGGTGATGAAG 1699
.|||||.||||||||.||.|||||.||.||.||||||||.||.|||||||
BL03261___clp 1650 GAAAACGGAGCTTGCCCGTGCACTTGCCGAGTCCATTTTCGGCGATGAAG 1699
BSNT_00178___ 1700 AATCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCAACT 1749
||.|.|||||..|.||.||||||||.||.||||||||||||||.|||||.
BL03261___clp 1700 AAGCAATGATTCGCATCGATATGTCCGAGTACATGGAAAAACATTCAACA 1749
BSNT_00178___ 1750 TCAAGACTTGTTGGTTCACCTCCGGGGTATGTGGGATATGATGAAGGCGG 1799
||||||||.||.|||||||||||.||.|||||.||.||||||||||||||
BL03261___clp 1750 TCAAGACTCGTCGGTTCACCTCCTGGATATGTCGGCTATGATGAAGGCGG 1799
BSNT_00178___ 1800 TCAATTGACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCGTGCTT-CTT 1848
.||..|.||.||.|||||.|||||||||||.||.||.||||| ||| |||
BL03261___clp 1800 ACAGCTCACTGAAAAAGTGAGAAGAAAACCGTATTCCGTCGT-CTTGCTT 1848
BSNT_00178___ 1849 GATGAGATCGAGAAAGCGCACCCTGATGTCTTCAATATCCTTCTGCAAGT 1898
|||||.|||||||||||.|||||.||||||||||||||..|.|||||.||
BL03261___clp 1849 GATGAAATCGAGAAAGCTCACCCAGATGTCTTCAATATTTTGCTGCAGGT 1898
BSNT_00178___ 1899 TCTTGAAGACGGACGATTGACTGATTCTAAAGGACGCACAGTCGATTTCC 1948
.|||||||||||.||..||||||||||.|||||.|||||.||.||.||..
BL03261___clp 1899 GCTTGAAGACGGCCGCCTGACTGATTCAAAAGGGCGCACGGTTGACTTTA 1948
BSNT_00178___ 1949 GCAATACCATTCTGATCATGACATCAAACGTCGGAGCAAGTGAGCTGAAA 1998
|.|||||.|||.||||||||||||||||||||||.||.||.||.||||.|
BL03261___clp 1949 GGAATACGATTTTGATCATGACATCAAACGTCGGTGCGAGCGAACTGAGA 1998
BSNT_00178___ 1999 CGCAATAAATATGTCGGCTTTAACGTTCAGGATGAAACTCAAAATCATAA 2048
.|.||||||||.|||||.|||||.||.|||||||||||.||.|||.||||
BL03261___clp 1999 AGAAATAAATACGTCGGGTTTAATGTCCAGGATGAAACCCAGAATTATAA 2048
BSNT_00178___ 2049 AGACATGAAAGACAAAGTGATGGGTGAATTAAAACGAGCGTTCAGACCTG 2098
|||.||||||||||||||.|||||||||.|||||||.||.||.|||||||
BL03261___clp 2049 AGATATGAAAGACAAAGTCATGGGTGAACTAAAACGCGCCTTTAGACCTG 2098
BSNT_00178___ 2099 AGTTCATCAACCGTATCGATGAAATCATTGTCTTCCATTCACTTGAGAAA 2148
|.||.||||||||.||.|||||.|||||.||||||||.||..|.||||||
BL03261___clp 2099 AATTTATCAACCGGATTGATGAGATCATCGTCTTCCACTCTTTGGAGAAA 2148
BSNT_00178___ 2149 AAACATCTTACTGAAATTGTGTCATTAATGTCTGATCAATTAACGAAACG 2198
||||||.|.|..||.|||||.||..|.|||||.||.|||||.||.||.||
BL03261___clp 2149 AAACATTTGAAAGATATTGTATCCCTCATGTCAGACCAATTGACCAAGCG 2198
BSNT_00178___ 2199 CTTGAAAGAACAAGATCTTTCTATCGAATTGACAGATGCTGCAAAAGCGA 2248
..||||||||||.||||||||.||.||..||||.||.||.||.||||..|
BL03261___clp 2199 TCTGAAAGAACAGGATCTTTCAATTGAGCTGACTGAAGCGGCTAAAGAAA 2248
BSNT_00178___ 2249 AAGTCGCGGAAGAGGGCGTTGACCTGGAATACGGTGCCCGTCCGTTAAGA 2298
||.||||.||.||.|||||.||.||.||||||||.||.|||||..|.|||
BL03261___clp 2249 AAATCGCCGATGAAGGCGTGGATCTCGAATACGGAGCGCGTCCTCTCAGA 2298
BSNT_00178___ 2299 AGAGCGATCCAAAAACATGTCGAGGATCGTTTATCTGAAGAACTCCTCAG 2348
|||||.|||||||||||.||.||.||.||..|.||.|||||.|||||.|.
BL03261___clp 2299 AGAGCAATCCAAAAACACGTGGAAGACCGGCTGTCAGAAGAGCTCCTAAA 2348
BSNT_00178___ 2349 AGGAAATATTCATAAAGGACAGCATATTGTTCTTGATGTAGAAGATGGCG 2398
|||..|||||||.|||||.||||||||||||.|.|||||||||||.||.|
BL03261___clp 2349 AGGCCATATTCAAAAAGGCCAGCATATTGTTTTGGATGTAGAAGACGGAG 2398
BSNT_00178___ 2399 AATTTGTCGTAAAAA-CGACTGCTAAAACGAATTAA 2433
||||||||||||||| ||| .|||||||||||.|||
BL03261___clp 2399 AATTTGTCGTAAAAACCGA-AGCTAAAACGAACTAA 2433
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