Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00175 and BL03259
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_00175.1.5803.seq
# -bsequence dna-align/BL03259___mcsA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00175-BL03259___mcsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00175-BL03259___mcsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00175
# 2: BL03259___mcsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 582
# Identity: 264/582 (45.4%)
# Similarity: 264/582 (45.4%)
# Gaps: 228/582 (39.2%)
# Score: 811.0
#
#
#=======================================
BSNT_00175 0 -------------------------------------------------- 0
BL03259___mcs 1 GTGATATGTCAAGAGTGTAAAGAAAGACCGGCAACTTTTCACTTTACGAA 50
BSNT_00175 0 -------------------------------------------------- 0
BL03259___mcs 51 AGTTATTAATGGTGAAAAAAAAGAAATGCACATCTGTGAACAATGTGCGA 100
BSNT_00175 0 -------------------------------------------------- 0
BL03259___mcs 101 AAGAGAACAGCGAGTCATATTCTATGAATGAAAGTGGCGGATTTTCCATC 150
BSNT_00175 1 ---------------------------ATGGATTCTTCATTT-CAAAATG 22
.|.||.||.||.||| ||||..|
BL03259___mcs 151 CATAATTTATTATCCGGACTGCTTAATTTTGACTCGTCTTTTACAAACAG 200
BSNT_00175 23 CA-------GGAACTCAAATGTTCAGTCACTCGGAGCAAATATCTGCTTG 65
|| |.|.|| |.|||| .||..||| |||.|.||.
BL03259___mcs 201 CAGCGAGGCGCAGCT----TTTTCA-ACAGCCGG-------ATCAGGTTT 238
BSNT_00175 66 TCCG-------AAATGCGGAATGACTTTTCAGCAATTCAGAAAAATTGGC 108
|.|| ||||||...|||||.||.|.|.||||..||||||..|||
BL03259___mcs 239 TGCGATGCAAAAAATGCAATATGACGTTCCCGGAATTTCGAAAAACCGGC 288
BSNT_00175 109 CGTTTTGGATGTTCGGAATGTTACAAAACATTTCATAGCAACATTACACC 158
||.||||||||||||||||||||.|||||.||.||...|.|.||.||.||
BL03259___mcs 289 CGGTTTGGATGTTCGGAATGTTATAAAACCTTCCACTCCTATATCACTCC 338
BSNT_00175 159 AATCCTACGTAAAGTGCACAGCGGAAACACTGTGCATGCAGGTAAGATAC 208
..|..||.|.|||||.||||||||.|||||.||.||.||.|||||.||||
BL03259___mcs 339 GGTTTTAAGAAAAGTTCACAGCGGGAACACGGTCCACGCGGGTAAAATAC 388
BSNT_00175 209 CGAAACGAATAGGCGGCAATCTTCATGTCAGACGGCAGATTGA-----TA 253
|.||.||.||.|||||.|||||.|||||.|||.|.||.||||| ||
BL03259___mcs 389 CAAAGCGGATCGGCGGTAATCTGCATGTAAGAAGACAAATTGAAGCATTA 438
BSNT_00175 254 TGCTAAAAAAG----GAATTAGAATCCTTAATCCATCAAGAAGAATTTGA 299
||||||| ||| |||| |||||.||.||.||.||||||||
BL03259___mcs 439 ----AAAAAAGAGCTGAA--AGAA---TTAATTCAGCAGGAGGAATTTGA 479
BSNT_00175 300 AAATGCAGCTCATGTAAGAGATCAAATTCGTTCATTAGAACAATCACTCA 349
|||.|||||..|..|.||||||||.||..|.||..|.||||||...||.|
BL03259___mcs 480 AAAAGCAGCCAACATCAGAGATCAGATCAGATCGCTTGAACAAAACCTGA 529
BSNT_00175 350 AAAGTACAGATAGTGAGGAGGAACAGGAGTAA 381
| |.||.|.| |||||||..||||.|.|
BL03259___mcs 530 A---TGCAAACA---AGGAGGAGGAGGACTGA 555
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