Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00174 and BL03258

See Amino acid alignment / Visit BSNT_00174 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_00174___ctsR.1.5803.seq
#    -bsequence dna-align/BL03258___ctsR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00174___ctsR-BL03258___ctsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00174___ctsR-BL03258___ctsR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00174___ctsR
# 2: BL03258___ctsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 469
# Identity:     365/469 (77.8%)
# Similarity:   365/469 (77.8%)
# Gaps:           8/469 ( 1.7%)
# Score: 1418.0
# 
#
#=======================================

BSNT_00174___      1 GTGGGACATAATATTTCTGACATCATTGAACAATATTTAAAACGAGTGTT     50
                     |||||..|.||||||||||||||.||.|||||.|||||.||||.|.|.||
BL03258___cts      1 GTGGGGAAAAATATTTCTGACATAATCGAACAGTATTTGAAACAAATATT     50

BSNT_00174___     51 AGATCAAAATGGCAAGGAAATTTTAGAGATTAAACGAAGTGAAATTGCAG    100
                     |||.||.||.||.||.|||||.||||||||||||||.||.|||||.||.|
BL03258___cts     51 AGAACAGAACGGGAAAGAAATATTAGAGATTAAACGGAGCGAAATAGCCG    100

BSNT_00174___    101 ATAAATTTCAATGCGTTCCTTCCCAAATAAATTATGTCATCAACACCAGA    150
                     ||||||||||.||.||||||||.||.||.|||||.||.|||||.||..|.
BL03258___cts    101 ATAAATTTCAGTGTGTTCCTTCTCAGATCAATTACGTAATCAATACGCGT    150

BSNT_00174___    151 TTTACAAGCGAAAGAGGATATATTGTTGAGAGCAAACGCGGGGGCGGCGG    200
                     |||||.|||||..|.|||||||||||.||.||||||.|.||.||||||||
BL03258___cts    151 TTTACGAGCGAGCGCGGATATATTGTCGAAAGCAAAAGAGGCGGCGGCGG    200

BSNT_00174___    201 TTACATCAGAATCATTAAAATTAAAATGAACAATGAAGTTGTCCTGATCA    250
                     |||.|||.||||.||||||||||||||||||.|..||.|||...||||.|
BL03258___cts    201 TTATATCCGAATTATTAAAATTAAAATGAACGACAAAATTGATTTGATTA    250

BSNT_00174___    251 ATAATATAATTTCTCAAATTAATAC----CCATTTGTCTCAAGCAGCCTC    296
                     |.|||||.||...||||||..||||    |    |.||.||.||.||.||
BL03258___cts    251 ACAATATTATGAATCAAATCTATACAAGGC----TCTCCCAGGCTGCTTC    296

BSNT_00174___    297 TGATGACATTATTTTAAGGCTATTAGAAGACAAGGTAATTTCAGAAAGAG    346
                     .||||||||.|||||||||||.||||||.|....||.|||.|||||||.|
BL03258___cts    297 AGATGACATCATTTTAAGGCTGTTAGAAAATGGTGTCATTACAGAAAGCG    346

BSNT_00174___    347 AAGCAAAAATGATGGTCAGTGTAATGGACCGCTCAGTTTTACACATTGAC    396
                     ||||.|||.|||||||.|||||.||||||||.||.||||||.|.|||||.
BL03258___cts    347 AAGCGAAATTGATGGTGAGTGTCATGGACCGTTCTGTTTTATATATTGAT    396

BSNT_00174___    397 TTACCTGAACGTGATGAATTAAGAGCGAGAATGATGAAGGCAATGCTGAC    446
                     ||.||||||||.||.|||||||||||.|||||||||||.||.|||||.||
BL03258___cts    397 TTGCCTGAACGAGACGAATTAAGAGCAAGAATGATGAAAGCCATGCTTAC    446

BSNT_00174___    447 TTCTTTAAAATTAAAATAA    465
                     .||..|.|||||.||.|||
BL03258___cts    447 GTCACTTAAATTTAAGTAA    465


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