Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01892 and BL03249
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_01892.1.5803.seq
# -bsequence dna-align/BL03249___yjaV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01892-BL03249___yjaV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01892-BL03249___yjaV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01892
# 2: BL03249___yjaV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 666
# Identity: 348/666 (52.3%)
# Similarity: 348/666 (52.3%)
# Gaps: 198/666 (29.7%)
# Score: 793.0
#
#
#=======================================
BSNT_01892 1 ATGGAATCAACGCTG---ATTGTA---GGTGCGGACGAATTTTTCGGCCT 44
||.|| ||.| .||||| ||.||.||.||.||.||||||||
BL03249___yja 1 -----ATGAA-GCCGGCACTTGTATATGGAGCAGATGAGTTCTTCGGCCT 44
BSNT_01892 45 TTCATTATGTGAACGAATGATGGATGAAGGCATACATGTTGACGTTGTT- 93
||||||.|||||||...|..|.||.||.|| |||||||.|.|.|
BL03249___yja 45 TTCATTTTGTGAACATCTACTTGAAGAGGG------TGTTGACATAGATG 88
BSNT_01892 94 -----CTGGCGGAAACA-------GAAGATAAAATGAGACAAATGTACTT 131
|||| |||| ||.||.||||.| |..||||||.|
BL03249___yja 89 TAAAGCTGG----AACAGACAAGCGACGAAAAAAAG---CTGATGTACCT 131
BSNT_01892 132 AGAAGAAAGACTCATGTGGCTTGGGAGAAATGAACTCTTTCGCC------ 175
.|||||..|.||.||||||||.||.|||||.||.|..||.||.|
BL03249___yja 132 CGAAGAGCGGCTGATGTGGCTGGGAAGAAACGAGCATTTCCGTCTCATCG 181
BSNT_01892 176 ------AGCTTGAA--CACATTGGAGACCAAAATTATGATACAAT----- 212
|||||||| |.|.|..|| || ||.|..|.||.||||
BL03249___yja 182 AAAAAGAGCTTGAAGCCCCGTACGA-AC--AAGTCTTCATCCAATACACA 228
BSNT_01892 213 ---TTGTATCCAGT-TCGGAA---------GTTTTTTGCCTTTAGACCAA 249
| |||| .||||| |.|....||.||.|.|.|||
BL03249___yja 229 GGCT------CAGTGCCGGAAGAAGCGCTGGCTGCAGGCGTTGAAAACAA 272
BSNT_01892 250 ---TGTGATTCTCCTTATATTTTAGTATATGAAGAAGACCGAAAAGAATG 296
|||.|||||..||.|.| |||...||.|||.
BL03249___yja 273 GCCTGTTATTCTGTTTGTCT-----------------ACCAGGAACAATT 305
BSNT_01892 297 GGAAAA------ACGTGAAAAAACAGGC---TCGGAAAA--------AAC 329
||||.| |||.| |.||| ..|||||| |||
BL03249___yja 306 GGAAGAGGATTTACGCG------CCGGCATGGAGGAAAAGGGTGTTGAAC 349
BSNT_01892 330 CGTGATC---CTGCCGAAAATGTATGGGCCATGGAA---------AGAAG 367
||||| ||.|||.|..|||..||.||.|||.| |||.|
BL03249___yja 350 --TGATCGTGCTTCCGGATCTGTTCGGTCCGTGGGACGTCAGGGCAGAGG 397
BSNT_01892 368 A-----AACAGAGGAAGACG----GCTATTACACA----AACGACGTGGC 404
| ||.|.||| |||| |||.|| |||||||.|||
BL03249___yja 398 ATAAACAAAACAGG--GACGGAGCGCTTTT-----TGTGAACGACGCGGC 440
BSNT_01892 405 TG-ACGAGTTGCTGAGATTCCTGT----TAGAACCAAGCCGTCATAGCAA 449
.| ||.||..|||| ||||| |.||| ||
BL03249___yja 441 CGCACAAGCCGCTG-----CCTGTGCTGTTGAA---------------AA 470
BSNT_01892 450 AGATCAGCTTTTT--GAATTGCAAGTCACAGAGAAAACCTCAAAAGAAGA 497
||| ||||| ||.|||||..|...|.||||.||..||.|.||..|
BL03249___yja 471 AGA-----TTTTTCAGATTTGCAGTTTGTACAGAAGACGCCATACGATAA 515
BSNT_01892 498 AGCAAAAACAA--AAATTAT---CGAGTGGAAAAGACAATTTTCATCAAT 542
||| |.| |.||.|| .||.||||..||||||.|.||..||.|
BL03249___yja 516 AGC-----CGATGAGATCATTGAAGAATGGATCAGACAAATGTCTACATT 560
BSNT_01892 543 TTTCGACAAATATTAA 558
||||||||||.|.|||
BL03249___yja 561 TTTCGACAAAAAATAA 576
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