Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01883 and BL03245

See Amino acid alignment / Visit BSNT_01883 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:23
# Commandline: needle
#    -asequence dna-align/BSNT_01883___carA.1.5803.seq
#    -bsequence dna-align/BL03245___carA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01883___carA-BL03245___carA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01883___carA-BL03245___carA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01883___carA
# 2: BL03245___carA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1108
# Identity:     775/1108 (69.9%)
# Similarity:   775/1108 (69.9%)
# Gaps:          89/1108 ( 8.0%)
# Score: 2598.0
# 
#
#=======================================

BSNT_01883___      1 ATGGAAGGTTATTTAGTGTTAGAAGATGGGACATCGTTCAGCGGCGAGCT     50
                     ||||||||.||||||||..|.||||||||.|||||.||||||||.||.||
BL03245___car      1 ATGGAAGGATATTTAGTTCTTGAAGATGGTACATCCTTCAGCGGAGAACT     50

BSNT_01883___     51 GGACGGCCATGAAAACTGTACGGGAGAAGCTGTTTTTTTCACAGGAATGA    100
                     ||||||.|.|||...|||.||.||.||||..||.|||||.||.||.||||
BL03245___car     51 GGACGGTCTTGACGGCTGCACCGGTGAAGTCGTCTTTTTTACGGGCATGA    100

BSNT_01883___    101 CAGGCTACCAGGAAGTGCTGACAGATCCATCGTATAAGGGACAGATTATT    150
                     |.||.||.|||||.||..||||||||||.||.|||||.||.|||||||||
BL03245___car    101 CCGGTTATCAGGAGGTTTTGACAGATCCTTCATATAAAGGCCAGATTATT    150

BSNT_01883___    151 GTATTTACCTACCCGCTGATTGGCAACTACGGCATAAATGAAAAGGACTT    200
                     ||.|||||.||.|||||||||||||||||.||.||.||||.||..||...
BL03245___car    151 GTCTTTACGTATCCGCTGATTGGCAACTATGGAATTAATGGAAGCGATGC    200

BSNT_01883___    201 TGAAAGCAAGAAACCGCAAGTAAAAGCAGCGGTTGTCTATGAGGCGTGTG    250
                     |||||||||..|.||.||.||.|.||..|..||.||||||||.|||||.|
BL03245___car    201 TGAAAGCAAACAGCCTCAGGTGAGAGGGGTCGTCGTCTATGAAGCGTGCG    250

BSNT_01883___    251 ATCA-CTTTTCTCATTATGAAGCGGTATACAGCCTCAAGGAGTATTTACA    299
                     | || .|||||.||..||.|.|||..|.|.|||||...|||.||.||...
BL03245___car    251 A-CAGATTTTCCCACCATCAGGCGACAGAAAGCCTTCGGGAATACTTGGC    299

BSNT_01883___    300 GAAATGGAACATTCCGCTGTTAACCCATGTTGATACGAGGGCTGTCGTGA    349
                     |||.|||.|..|||||||.||..|.||.||.||.||.||.||.||.||..
BL03245___car    300 GAAGTGGGATGTTCCGCTTTTGTCGCACGTGGACACAAGAGCGGTTGTTC    349

BSNT_01883___    350 AGAAAATCCGGGCAAACGGGACGATGGGTGCAACAGTCACAGCCT--CTA    397
                     ||.|.|||.|||||||.||||||.||..|||        .||.||  |.|
BL03245___car    350 AGCATATCAGGGCAAAAGGGACGCTGAATGC--------GAGGCTGACGA    391

BSNT_01883___    398 A--AGAAGGAGCTGAGAT---GGCCCTTCAACCAG-------AGAATGTG    435
                     |  |.|||||  .||.||   |||.|..| .||||       |..|||.|
BL03245___car    392 AACAAAAGGA--CGACATCCCGGCTCCGC-GCCAGCTGGAAAACTATGCG    438

BSNT_01883___    436 GCAGAGCAGGCTTCAGCCC---AGGAAATCAGCACATTCGGCGACGGGAA    482
                     |||   ||||.|||.|..|   |.||||.|.||.|.||.||.||.||.||
BL03245___car    439 GCA---CAGGTTTCCGGACAAAACGAAAACGGCGCTTTTGGGGAAGGCAA    485

BSNT_01883___    483 TAAACATATCGCTCTCATTGATTTTGGCTATAAAAAGTCAATCGCATCAT    532
                     ||..|||||.||.||.||.|||||.||||||||||||||.|||||.||||
BL03245___car    486 TACGCATATTGCGCTGATCGATTTCGGCTATAAAAAGTCGATCGCTTCAT    535

BSNT_01883___    533 CACTTGTCAAA-AGAGGCTGCAAGGTTACTGTGGTGCCATACCAGCAAAT    581
                     |.||.| |||| .|.||||||||.||.||.||.||.||.||.||..|.||
BL03245___car    536 CGCTAG-CAAACCGGGGCTGCAAAGTGACGGTCGTTCCCTATCAAGAGAT    584

BSNT_01883___    582 GGA-GGC----CGTATACAACATCAAACCCGATGGCATTGTGCTATCGAA    626
                     ||| |||    ||     ||..|.||.||.||.||.||.||.||.||.||
BL03245___car    585 GGACGGCATTGCG-----AAGCTGAATCCGGACGGAATCGTCCTTTCAAA    629

BSNT_01883___    627 CGGACCTGGAGATCCGAAAGCAATCCAGCCATATTTAGGAAAGATCAAAA    676
                     |||.||.||.|||||||||||.||||..||||||.|.|          |.
BL03245___car    630 CGGGCCGGGCGATCCGAAAGCGATCCTTCCATATATGG----------AT    669

BSNT_01883___    677 GCA---------------TCATCAGCCGCTTTCCGACTCTCGGCATTTGT    711
                     |||               ||.||     ||.||||||.||||||||.||.
BL03245___car    670 GCACTCCGGGGTATCATTTCTTC-----CTATCCGACGCTCGGCATCTGC    714

BSNT_01883___    712 CTCGGACATCAGCTGATCGCGCTCGCGTTCGGAGGGAATACTTTTAAGCT    761
                     |||||.||.|||||||||||||||||.||||||.|..|.||.|.||||||
BL03245___car    715 CTCGGGCACCAGCTGATCGCGCTCGCATTCGGAAGCGACACGTATAAGCT    764

BSNT_01883___    762 GCCATTCGGACACAGGGGAGCTAATCATCCGGTCATCGACCGTGAGACGA    811
                     .||.|||||.|||||||||||.||||||||||||||.|||...|||||..
BL03245___car    765 TCCGTTCGGCCACAGGGGAGCCAATCATCCGGTCATGGACAAAGAGACCG    814

BSNT_01883___    812 AACGGGTCTTTATGACAAGCCAAAACCACAGCTATGTGGTTGAT--GAAC    859
                     .|||.||.||.||||||||||||||.|||||||||||.||.|||  |.||
BL03245___car    815 GACGCGTGTTCATGACAAGCCAAAATCACAGCTATGTCGTCGATCGGGAC    864

BSNT_01883___    860 AGTCGATTAATGAAGAAGAGCTCACGATCAGATTTCATCATGTCAATGAT    909
                     |  |.||.|..|||.|.||..|..|..||||.||||||||||||||.|  
BL03245___car    865 A--CCATCAGCGAAAATGAATTTTCCGTCAGGTTTCATCATGTCAACG--    910

BSNT_01883___    910 ACG--TCAGTTGAAGGGCT--TGCCCATAAAAAACTGCCAGTCATGAGTG    955
                     |||  |||||.||||||||  ||  |||||||.||||||.|||.|....|
BL03245___car    911 ACGGTTCAGTAGAAGGGCTGATG--CATAAAACACTGCCTGTCCTATCCG    958

BSNT_01883___    956 TGCAATTCCACCCGGAGGCCCATCCCGGACCGGCGGAAAGCGAATGGGTT   1005
                     |.||.||.||.|||||.||||||||.||||||||.||||||||||||.|.
BL03245___car    959 TTCAGTTTCATCCGGAAGCCCATCCGGGACCGGCTGAAAGCGAATGGATA   1008

BSNT_01883___   1006 TTTGATGATTATCTAAAGAATGTGATAC-CAGCAAGGAGAGAAATCGCGC   1054
                     ||.|..||.|||.|..||||..||| || .||||||||||||.|||||.|
BL03245___car   1009 TTCGGAGAATATTTGCAGAAATTGA-ACGAAGCAAGGAGAGAGATCGCCC   1057

BSNT_01883___   1055 ATGCCTAA   1062
                     ||||||||
BL03245___car   1058 ATGCCTAA   1065


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