Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01880 and BL03242
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:23
# Commandline: needle
# -asequence dna-align/BSNT_01880___argJ.1.5803.seq
# -bsequence dna-align/BL03242___argJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01880___argJ-BL03242___argJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01880___argJ-BL03242___argJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01880___argJ
# 2: BL03242___argJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1302
# Identity: 901/1302 (69.2%)
# Similarity: 901/1302 (69.2%)
# Gaps: 162/1302 (12.4%)
# Score: 3126.0
#
#
#=======================================
BSNT_01880___ 1 ATGATTCAGTTAAGTGAAG--ATCAAATTGTAAAAGTAACAG--GTGA-- 44
|||||||||.|.|||.||| |.|| |||||..||||| | ||
BL03242___arg 1 ATGATTCAGGTGAGTCAAGACAGCA-----TAAAAAAAACAGACG-GAAG 44
BSNT_01880___ 45 TGTATCCTCGCCAAAAGGGTTTCAGGCAAAGGGTGTGCATTGCGGGCTGC 94
.||..|.|||||.||.||.|.||..|||||.||.||.||.|||||.||.|
BL03242___arg 45 CGTCGCTTCGCCTAAGGGCTATCTTGCAAAAGGGGTCCACTGCGGCCTCC 94
BSNT_01880___ 95 GCTACTCGAAAAAAGACCTCGGCGTCATTATCAGCGAGACACTGGCTGTG 144
||||.||.|||||.||.||.||..||||.||||||...|.||.|||.|||
BL03242___arg 95 GCTATTCAAAAAAGGATCTTGGGATCATCATCAGCTCAAGACCGGCGGTG 144
BSNT_01880___ 145 AGCGCAGCAGTTTATACCCAAAGCCACTTTCAGGCTGCTCCGATCAAAGT 194
|||||.||.|||||||||||||||||||||||||||||.||||||||.||
BL03242___arg 145 AGCGCCGCCGTTTATACCCAAAGCCACTTTCAGGCTGCGCCGATCAAGGT 194
BSNT_01880___ 195 GACACAAGACAGCTT-----AAAGCACGGACCGACA-CTGAAAGCCGTTA 238
|||.||.||.|||.| |||||.|| || ||..|||||||.|
BL03242___arg 195 GACGCAGGAAAGCCTCAAAAAAAGCGCG------CATCTCCAAGCCGTCA 238
BSNT_01880___ 239 TCGTCAACAGTGCCATTGCCAATGCCTGCACGGGAGAACAAGGCCTAAAG 288
||||||||||.||||.||||||.||.|||||||||||.||.|||.||||.
BL03242___arg 239 TCGTCAACAGCGCCAATGCCAACGCATGCACGGGAGAGCAGGGCTTAAAA 288
BSNT_01880___ 289 GACGCATACACAATGCGGGAGAGCTTTGCTTCACA----------GCTTG 328
||.||.||...|||||| .|.|||.| |||.|
BL03242___arg 289 GATGCTTATGAAATGCG----------CCGTCAAAGCGCTGATATGCTCG 328
BSNT_01880___ 329 GCATTGAGCCGGAGCTTGTCGCTGTTTCATCAACGGGTGTCATCGGCGAG 378
|.||.||||||||.||.||.||.||.||.|||||.||.|||||||||||.
BL03242___arg 329 GGATCGAGCCGGATCTGGTGGCCGTGTCCTCAACCGGCGTCATCGGCGAA 378
BSNT_01880___ 379 CATTTAGACATGGAAAAAATC------------------CACGCGGGGAT 410
.|..|..|.||||||||.||| |.|||.|.||.
BL03242___arg 379 TACCTCAATATGGAAAACATCACAAAAGGCATCAGCCTTCTCGCCGAGAC 428
BSNT_01880___ 411 CGAG-CTGCTGAAAGGAACACCTGCGGGATCAGGCGATTTTGAGGAAGCA 459
.||| ||||.|| |||||||||.||.|||||.
BL03242___arg 429 AGAGCCTGCCGA-------------------AGGCGATTTCGAAGAAGCG 459
BSNT_01880___ 460 ATTTTAACAACTGATACGGTGATCAAGCAGACGTGCTATGAACTGGCAAT 509
||.|||||.||.||.||.||||||||.||.|||||||||||||||...||
BL03242___arg 460 ATCTTAACGACGGACACCGTGATCAAACAAACGTGCTATGAACTGATGAT 509
BSNT_01880___ 510 CGGCGGCAAAACAGTCACGATCGGCGGAGCGGCCAAAGGCTCAGGGATGA 559
|||||||.|||.|||.||||||||||||||||||||.||.||.||.||||
BL03242___arg 510 CGGCGGCCAAAAAGTGACGATCGGCGGAGCGGCCAAGGGGTCGGGAATGA 559
BSNT_01880___ 560 TACACCCGAACATGGCCACGATGCTGGGATTTGTGACAACTGACGC-GGC 608
|.||||||||.|||||.||||||||.||.|||||.|||||.||.|| .||
BL03242___arg 560 TCCACCCGAATATGGCGACGATGCTCGGCTTTGTCACAACAGATGCATGC 609
BSNT_01880___ 609 AATCGAAGAAAAAGCGCTGCAAAAGGCGCTTCGAGAAATCACTGACGTTT 658
||||||||||..||||||||||.|||..|..|.||||||||.|||||||
BL03242___arg 610 -ATCGAAGAAAGCGCGCTGCAAAGGGCTTTAAGGGAAATCACGGACGTTT 658
BSNT_01880___ 659 CATTTAACCAAATCACAGTTGACGGAGAAACATCCACGAACGATATGGTA 708
|.||.|||||.||.||.||.|||||.||.|||||.||||||||||||||.
BL03242___arg 659 CGTTCAACCAGATAACGGTCGACGGCGATACATCGACGAACGATATGGTG 708
BSNT_01880___ 709 TTAGTTATGGCGAATGGCTGCGCCGAAAACGAGTGCCTGACA-GAAGACC 757
.|.||.||||||||.||.|||||||.|||.|||.|||| .|| |||||.|
BL03242___arg 709 CTCGTCATGGCGAACGGATGCGCCGGAAATGAGCGCCT-CCATGAAGAAC 757
BSNT_01880___ 758 ATCCAGACTGGCCGGTCTTTAAAAAAACACT----CTTG-CT-CACTTGT 801
|...|||.||||||||.||.||||||...|| |||| || |||
BL03242___arg 758 ACGAAGATTGGCCGGTTTTCAAAAAAGGCCTGCAGCTTGTCTGCAC---- 803
BSNT_01880___ 802 GAGGATCTGGCTAAAGAGATTGCCAGAGACGGAGAAGGCGCGACAAAACT 851
.||.||.||.|||.|.||.||.||||||||.|||||.||||||||.||
BL03242___arg 804 --AGACCTCGCCAAACAAATCGCAAGAGACGGGGAAGGGGCGACAAAGCT 851
BSNT_01880___ 852 AATTGAAGCACAAGTACAGGGAGCGAAAAACAATCTTGA--TGCAAACGT 899
.||.||.|...||||..|.||.|||||||.||||||||| .||||| |
BL03242___arg 852 GATCGAGGTTGAAGTGAACGGCGCGAAAAGCAATCTTGAAGCGCAAA--T 899
BSNT_01880___ 900 CATTGCCAAAAAGATTGTCGGCTCAAATCTCGTGAAAACGGCAGTATACG 949
|||.||||||||.||.|||||||||||.||.||.|||||.||.||.||||
BL03242___arg 900 CATCGCCAAAAAAATCGTCGGCTCAAACCTTGTAAAAACCGCGGTTTACG 949
BSNT_01880___ 950 GAACAGATGCCAACTGGGGGCGGATC---------ATCGGAGCCATTGGA 990
||||.|||||.||||||||..|.||| ||||| |||
BL03242___arg 950 GAACGGATGCGAACTGGGGCAGAATCGTTGTCGCAATCGG-------GGA 992
BSNT_01880___ 991 CACTCCGCA--GCTCAAGTGA---CGGCAGAAGAAGTAGAGGTTTAT--- 1032
|| ||| |||...|||| ||| ||||| ||.|| .||
BL03242___arg 993 CA----GCATGGCTGCTGTGACACCGG-AGAAG--GTGGA----AATCCG 1031
BSNT_01880___ 1033 -CTTGGCGGCCAATGCCTGTTTAAGAATAACGAGCCTCAGCCATTCTCTG 1081
||.||||||||||||||.|||||.||.|||||.||.|||||.||.||.|
BL03242___arg 1032 CCTGGGCGGCCAATGCCTATTTAAAAACAACGAACCCCAGCCGTTTTCGG 1081
BSNT_01880___ 1082 AATCTCTCGCCAAGGAATACCTTGAA------GGAGATGAAATCACCATT 1125
||...||.|||||...|||..|.||| |.|| |||||
BL03242___arg 1082 AAGAGCTGGCCAAAACATATTTAGAAAACAGCGAAG-TGAAA-------- 1122
BSNT_01880___ 1126 GTCATCAAG------ATGGATGAAGGGGACGGAAACGGGAGAGCGTGGGG 1169
|||.|| |||.|.|||||.||.|||||.||.|..||.|||||
BL03242___arg 1123 ---ATCGAGGTTTTCATGCAGGAAGGTGAAGGAAAGGGTACGGCTTGGGG 1169
BSNT_01880___ 1170 CTGTGACCTGACCTATGACTATATCAAAATTAACGCGAGCTATCGCACGT 1219
|||.||..|.||.|||||.||..|||||||.||.|||||||||||.||||
BL03242___arg 1170 CTGCGATTTAACTTATGAATACGTCAAAATCAATGCGAGCTATCGTACGT 1219
BSNT_01880___ 1220 AA 1221
||
BL03242___arg 1220 AA 1221
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