Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01871 and BL03240

See Amino acid alignment / Visit BSNT_01871 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:23
# Commandline: needle
#    -asequence dna-align/BSNT_01871___yitW.1.5803.seq
#    -bsequence dna-align/BL03240___yitW.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01871___yitW-BL03240___yitW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01871___yitW-BL03240___yitW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01871___yitW
# 2: BL03240___yitW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     245/309 (79.3%)
# Similarity:   245/309 (79.3%)
# Gaps:           0/309 ( 0.0%)
# Score: 969.0
# 
#
#=======================================

BSNT_01871___      1 GTGGAAGAAGCATTAAAAGAAAACATCATGGGCGCCCTGGAACAGGTTGT     50
                     |||||.||||||||||||||||||||||||||||||||.||||||||.||
BL03240___yit      1 GTGGATGAAGCATTAAAAGAAAACATCATGGGCGCCCTTGAACAGGTCGT     50

BSNT_01871___     51 CGATCCTGAGCTTGGCGTTGATATCGTGAACCTTGGTTTGGTATACGATG    100
                     .||.|||||..|.|||||.||||||||.||.||.||..|.||||||||.|
BL03240___yit     51 TGACCCTGAATTGGGCGTCGATATCGTCAATCTCGGCCTTGTATACGACG    100

BSNT_01871___    101 TTGACATGGATGAAGACGGCTTAACGCACGTGACGATGACACTGACATCA    150
                     |.||.||||||||..|||||..|||..|||||||.|||||..||||.|||
BL03240___yit    101 TAGATATGGATGAGAACGGCAAAACAGACGTGACCATGACTTTGACTTCA    150

BSNT_01871___    151 ATGGGATGCCCTTTAGCGCCGATTATCGTGGATGAGGTGAAAAAAGCATT    200
                     |||||.||.||..|.||||||||.|||||.|||||.||.||||||||..|
BL03240___yit    151 ATGGGCTGTCCGCTGGCGCCGATCATCGTAGATGAAGTCAAAAAAGCGCT    200

BSNT_01871___    201 AGCGGACCTTCCTGAAGTGAAAGACACAGAGGTTCACATTGTATGGAATC    250
                     .||.||..||||.|||||.||.||....||.|||||.||.||.|||||||
BL03240___yit    201 CGCAGATATTCCGGAAGTCAAGGAAGTTGACGTTCATATCGTCTGGAATC    250

BSNT_01871___    251 CGCCTTGGACTAGGGATAAAATGTCCAGATACGCAAAAATTGCGCTTGGC    300
                     ||||||||||.|||||.||||||||..||||.||.|||||.||.|||||.
BL03240___yit    251 CGCCTTGGACAAGGGACAAAATGTCGCGATATGCGAAAATCGCACTTGGT    300

BSNT_01871___    301 ATTCAATAA    309
                     ||.||||||
BL03240___yit    301 ATACAATAA    309


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