Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02799 and BL03236
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_02799.1.5803.seq
# -bsequence dna-align/BL03236___ynbA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02799-BL03236___ynbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02799-BL03236___ynbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02799
# 2: BL03236___ynbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1425
# Identity: 937/1425 (65.8%)
# Similarity: 937/1425 (65.8%)
# Gaps: 204/1425 (14.3%)
# Score: 3250.5
#
#
#=======================================
BSNT_02799 1 TTGAGAGGTCTGTTTTTTGCTCGTATTTCCGCTTTTCAAAGCAATCGATT 50
BL03236___ynb 0 -------------------------------------------------- 0
BSNT_02799 51 TGTGGTATACACATGCAGGGTTTGGTATGATAATACTACTGCCCAATATG 100
BL03236___ynb 0 -------------------------------------------------- 0
BSNT_02799 101 CAAAAGAAAGGAACATCCATTTGAACGAACAAGAAACGATTCAGGAGAAA 150
|||||||||||.|||...||..|.||||||
BL03236___ynb 1 --------------------TTGAACGAACAGGAAGTCATGAAAGAGAAA 30
BSNT_02799 151 GCCATTTTAGTCGGATGTCAGCTGCCGCATATCACGGATGAGCATTTTGA 200
|||||.|||||||||||.|||||.|||||..|..|.|||||||.||||..
BL03236___ynb 31 GCCATATTAGTCGGATGCCAGCTTCCGCACGTGTCTGATGAGCGTTTTTC 80
BSNT_02799 201 AAATTCTATGGAAGAGCTAGCATCTCTGACGAAAACAGCAGACGGAAAAG 250
|.|.||.|||||||||||.||..|.|||||||||||.||.|||||||..|
BL03236___ynb 81 ATACTCGATGGAAGAGCTCGCCGCGCTGACGAAAACGGCCGACGGAACGG 130
BSNT_02799 251 TACTGACCAGCGTCACACAAAAACGGAACAGGGCTGACGCCGCTACATAT 300
|..|..|||..|||||.||.||.||||||.|.|..||.||.|||||||||
BL03236___ynb 131 TTGTTTCCACGGTCACGCAGAAGCGGAACCGTGTGGATGCTGCTACATAT 180
BSNT_02799 301 ATAGGAAAAGGGAAGGTAGAAGAGCTGAA--GGCACTGGTG------GAA 342
||.||||||||.||.||||| |||| ||| |||| |||
BL03236___ynb 181 ATCGGAAAAGGAAAAGTAGA-----TGAATTGGC---GGTGCTCTGTGAA 222
BSNT_02799 343 GAGCTTGAAG-CTGATCTCCTCATCTTTAATGATGAACTGTCGCCAAGTC 391
|||| ||..| |.|||.|..|.||.||||||||||||.|||||||.||||
BL03236___ynb 223 GAGC-TGTCGCCCGATGTTTTAATTTTTAATGATGAATTGTCGCCGAGTC 271
BSNT_02799 392 AGCTGAA-------GTCATTGGCAACAGCAATTGAAGTGAAGATGATTGA 434
||||||| |||| |||| || ||||.|||||.||.||.||
BL03236___ynb 272 AGCTGAAAGCGCTTGTCA----CAAC-GC--TTGACGTGAAAATCATCGA 314
BSNT_02799 435 CCGCACGCAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAG 484
|||.|||||.|||||..|.||||||||.||.||.||.|||||.||.||.|
BL03236___ynb 315 CCGGACGCAGTTGATCCTTGATATTTTCGCCAAACGCGCGAGGACAAGGG 364
BSNT_02799 485 AAGGCAAACTTCAAATTGAGCTGGCTCAGCTGCAATATGCACTGCCGCGT 534
||||.||.||.||||||||||||||.|||||||||||.||.||.|||||.
BL03236___ynb 365 AAGGAAAGCTGCAAATTGAGCTGGCACAGCTGCAATACGCCCTCCCGCGG 414
BSNT_02799 535 CTGACGGGACAAGGGATCAATCTCTCCCGGCAAGGCGGAGGAATTGGGGC 584
.|.|..||.||.||.|||||.||.||..||||||||||||||||.||..|
BL03236___ynb 415 TTAAGCGGCCAGGGAATCAACCTGTCAAGGCAAGGCGGAGGAATCGGAAC 464
BSNT_02799 585 AAGAGGTCCCGGGGAAACGAAACTGGAAACCGACCGCCGCCATATCAGAA 634
|||||||||.|||||.||.||.||.|||||||||||.|||||||||||||
BL03236___ynb 465 AAGAGGTCCAGGGGAGACAAAGCTTGAAACCGACCGGCGCCATATCAGAA 514
BSNT_02799 635 ATCGCATTCATGAAATCAACACACAGCTTTCCACTGTCATTCGCCATAGA 684
|.||.||||||||||||||....|||||.||.||.|||||||||||.|||
BL03236___ynb 515 ACCGGATTCATGAAATCAATGTTCAGCTGTCTACCGTCATTCGCCACAGA 564
BSNT_02799 685 AGCCGATACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAATTGCGCT 734
|||.|||||.|.|||||||||||||||||||||||.||.|||||.|||||
BL03236___ynb 565 AGCAGATACAGAGAAAGAAGAAAGAAAAACGGTGTACTGCAAATCGCGCT 614
BSNT_02799 735 TGTCGGCTATACAAACGCAGGGAAATCAACATGGTTCAACCGCCTGACGA 784
|||||||||.||.||.|||||||||||.||||||||.|||.|.||.|| |
BL03236___ynb 615 TGTCGGCTACACCAATGCAGGGAAATCGACATGGTTTAACAGGCTTAC-A 663
BSNT_02799 785 G-TGCTGACAGCTATGAAGAAGATCTCCTGTTTGCCACGCTGGACCCGAT 833
| .||.|||||||||||||||.|.||..||||.|||||.||.||||||||
BL03236___ynb 664 GACGCCGACAGCTATGAAGAAAACCTTTTGTTCGCCACACTTGACCCGAT 713
BSNT_02799 834 GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 883
||||.|.||||||.|.||.||.|||||.|||||.||.||.||.||.||||
BL03236___ynb 714 GACCCGCAAAATGATGCTCCCGAGCGGATACAGCGTGCTGCTCTCGGATA 763
BSNT_02799 884 CAGTAGGATTTATTCAGGATCTTCCGACGACATTGATTGCTGCATTCCGC 933
||||.||.||||||||||||||.|||||.||.|||||.||.||.|||.|.
BL03236___ynb 764 CAGTCGGGTTTATTCAGGATCTGCCGACAACTTTGATCGCGGCTTTCAGA 813
BSNT_02799 934 TCAACGCTTGAGGAAGTAAAAGAAGCGGATTTGATCCTGCATTTAATTGA 983
||.|||||.||.||.||.||||||||.|||.||||.||.|||.|.||.||
BL03236___ynb 814 TCGACGCTCGAAGAGGTGAAAGAAGCCGATCTGATTCTTCATATGATCGA 863
BSNT_02799 984 TTCTTCAAATGAGGATTATGCGGGACATGAAAAAACAGTGCTTCGGCTGC 1033
||||||..|.||.||.||.|.|||.|||||..|.||.||....||.||.|
BL03236___ynb 864 TTCTTCTCACGAAGACTACGAGGGCCATGAGGAGACGGTCAAGCGCCTTC 913
BSNT_02799 1034 TTGAGGAGCTTGAAGCAGATGATATCCCGATGCTGACGGCTTACAATAAA 1083
|||||||.|||||||||||.|||||.||..|..|.||.|..||.||.|||
BL03236___ynb 914 TTGAGGAACTTGAAGCAGACGATATTCCTGTTTTAACCGTCTATAACAAA 963
BSNT_02799 1084 CGTGATCAAAAACTGCCTGATTTTATACCGTCCGCCGGAAGGGATCACAT 1133
.|.||.|..||.|.|||||||||.||.||.||..|.||.||.|..||.||
BL03236___ynb 964 AGAGACCGGAAGCGGCCTGATTTCATCCCTTCTTCAGGGAGAGGGCATAT 1013
BSNT_02799 1134 TATGGTCAGTGCGAAATTTGA-GGACGAC--GCTGCAGCCTTTAAAGAAG 1180
.|||...||.||.|||.|.|| ||| ||| ||.||.| |||||..|.|
BL03236___ynb 1014 CATGACGAGCGCCAAAATAGACGGA-GACTTGCCGCTG--TTTAAGCAGG 1060
BSNT_02799 1181 CGATTCAGCGCTATTTGCGCCAA----GAACTGTTAACGT--CTTTTGAA 1224
||.||.|...||||.|| || ||.|||.| ||| |.|.||
BL03236___ynb 1061 CGGTTGAAGACTATCTG----AAAAAGGAGCTGCT--CGTTCCGTATG-- 1102
BSNT_02799 1225 GCACATG----TGCCGGCAAGTGAAGGGAAGCTCCTTTCCAGAATCAAAT 1270
||.|| |.||.||....|||||.|.|||..|.||.||||||||.|
BL03236___ynb 1103 --ACGTGAGAATTCCCGCTTCAGAAGGAAGGCTGTTGTCGAGAATCAAGT 1150
BSNT_02799 1271 CGGAAACGATGGTAGACCGCTTCTATTTTAATGAAGA---------AAAT 1311
|.||.||.|||....||.||..|..||||.|.||||| |.||
BL03236___ynb 1151 CTGAGACAATGACGAACAGCACCGTTTTTGACGAAGATCGCGAAGCATAT 1200
BSNT_02799 1312 GAACAGT---ATGACATATCCGGCTATGTCCAAGAAGAGCAAAGTATCAT 1358
|| ||| |.||.|||| |.||| ..||.||||..||..|
BL03236___ynb 1201 GA--AGTGGAAGGATATAT-------TCTCC---CTGACCAAAACATTTT 1238
BSNT_02799 1359 CGGTGAATTAAAGAAGTATATGTAG 1383
.||.||..|.|||||||||||||||
BL03236___ynb 1239 GGGAGAGCTGAAGAAGTATATGTAG 1263
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