Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02800 and BL03235
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_02800___ynbB.1.5803.seq
# -bsequence dna-align/BL03235___ynbB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02800___ynbB-BL03235___ynbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02800___ynbB-BL03235___ynbB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02800___ynbB
# 2: BL03235___ynbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1285
# Identity: 972/1285 (75.6%)
# Similarity: 972/1285 (75.6%)
# Gaps: 38/1285 ( 3.0%)
# Score: 3589.0
#
#
#=======================================
BSNT_02800___ 1 ATGTTTGACACATTAACACACGGAGAATTATTGAAGAAAACGGCAATGGA 50
||||||||.|||||||.|||||||||..||.|.|||||||||||..||||
BL03235___ynb 1 ATGTTTGAGACATTAAAACACGGAGATCTACTAAAGAAAACGGCGGTGGA 50
BSNT_02800___ 51 AGTGGAAGCGGACATTGC-CGGCATTCATAAACAAATAGAAGAAATCAGC 99
.|..|||.|.|||||.|| |.| ||.||.|||..|||.||.||||||||.
BL03235___ynb 51 GGCTGAAACCGACATCGCACAG-ATCCACAAAACAATTGATGAAATCAGT 99
BSNT_02800___ 100 GAGCGAAATGAGTGGAGAGTGCTTCAAAGCTATAGAAAACACAAAGTAAG 149
||.||||||||||||||.|||||..|||||||.|||||.|||||||||..
BL03235___ynb 100 GAACGAAATGAGTGGAGGGTGCTCGAAAGCTACAGAAAGCACAAAGTATC 149
BSNT_02800___ 150 CGACACTCATTTCATGCCGTCTACTGGATACGGCTATGATGATATCGGAA 199
.|||||.|||||||..||.||.||.||.||||||||.|||||.|||||..
BL03235___ynb 150 GGACACGCATTTCACACCATCGACAGGCTACGGCTACGATGACATCGGCC 199
BSNT_02800___ 200 GAGACACGCTTGAAAGCATATATGCGGATGTGTTTGGCGGAGAAGCGGGG 249
|.||.|||||.||||..||.|||||.||.||.||.|||||.|||||||..
BL03235___ynb 200 GCGATACGCTGGAAAAAATCTATGCCGACGTCTTCGGCGGTGAAGCGGCC 249
BSNT_02800___ 250 CTTGTAAGGCCGCAAATCATTTCAGGCACACATGCGATCTCAATTGCTTT 299
|||||.||.|||||.|||||.||.||.||.|||||.||.|||||.|||||
BL03235___ynb 250 CTTGTCAGACCGCAGATCATCTCGGGAACCCATGCAATATCAATCGCTTT 299
BSNT_02800___ 300 GTTCGGTGTCCTCAGACCGGGGGACGAGCTCCTTTATATCACGGGCAAGC 349
.|||||.||.|||.|.||||||||.||.||.|||||.|||||.|||||.|
BL03235___ynb 300 ATTCGGCGTTCTCCGCCCGGGGGAAGAACTTCTTTACATCACTGGCAAAC 349
BSNT_02800___ 350 CGTATGATACGCTAGAGGAAATTGTGGGCGTCAGGGGTGGAGAAAACGCT 399
||||.|||||.||.||.||.||.||.|||||||||||.|..||||||.|.
BL03235___ynb 350 CGTACGATACCCTCGAAGAGATCGTCGGCGTCAGGGGCGAGGAAAACTCG 399
BSNT_02800___ 400 GGATCGTTAAAGGATTTTCAAATCGGCTATA---ATGCGGTTGATCTGAC 446
||.||.||.||||||||.||.|||||.||.| || ||.||.|||||
BL03235___ynb 400 GGGTCTTTGAAGGATTTCCAGATCGGATACAGCCAT---GTCGAGCTGAC 446
BSNT_02800___ 447 GAAAGACGGAAAGATAGACTATGATGCAGTCGCCGCTGCGATCAATCCGA 496
..||||.|||....|.||.|.|||....||.||.|||.|.||||..|||.
BL03235___ynb 447 AGAAGAGGGAGCCGTTGATTTTGACCGGGTGGCAGCTTCCATCACGCCGC 496
BSNT_02800___ 497 AGACAAAAGTAATCGGCATTCAGCGCTCAAAAGGATATGCGAATCGCCCT 546
|||||||.||..||||.||.|||||||||||||||||.||..|.||.||.
BL03235___ynb 497 AGACAAAGGTCGTCGGAATCCAGCGCTCAAAAGGATACGCAGACCGTCCG 546
BSNT_02800___ 547 TCTTTCTTAATTAGTGAAAT--AAAAGAAATGATCCGTTTTGTAAAAGAA 594
|||||...||||..|||.|| |.||| |||||.||.|||||.||||||
BL03235___ynb 547 TCTTTTACAATTGATGAGATTGAGAAG--ATGATTCGCTTTGTTAAAGAA 594
BSNT_02800___ 595 GTCAATGAAAACCTGATCGTCTTTGTGGACAACTGTTACGGAGAATTTGT 644
.|.||.||||||.|.|||||.||.||.||||||||.|||||.||||||||
BL03235___ynb 595 ATAAACGAAAACATCATCGTTTTCGTCGACAACTGCTACGGCGAATTTGT 644
BSNT_02800___ 645 GGAAGAGCTTGAGCCATGCCATGTTGGAGCCGATCTGATGGCGGGATCTC 694
.|||||||.||||||.||||||||||||||.|||||.|||||.||.||.|
BL03235___ynb 645 AGAAGAGCGTGAGCCGTGCCATGTTGGAGCGGATCTCATGGCAGGCTCGC 694
BSNT_02800___ 695 TCATTAAAAATCCCGGCGGCGGCCTTGCGAAAACAGGCGGCTACCTCGTC 744
|.||||||||.||.||.||||||||.||.||||||||||||||..||..|
BL03235___ynb 695 TTATTAAAAACCCGGGAGGCGGCCTCGCCAAAACAGGCGGCTATATCACC 744
BSNT_02800___ 745 GGAAAAGCGAAATGGATTGAAGCTTGCTCATACCGTATGACGTCACCTGG 794
||.||.|..||||||.|..||||.|||||.|||.|.|||||.|||||.||
BL03235___ynb 745 GGCAAGGAAAAATGGGTGAAAGCCTGCTCCTACAGAATGACTTCACCGGG 794
BSNT_02800___ 795 CATCGGCAGAGAAGCGGGGGCATCTCTTTACTCGCTCCAAGAAATGTACC 844
.||.|||||.|||||.||.|||||..|.|||.|||||||.||.|||||.|
BL03235___ynb 795 AATTGGCAGTGAAGCCGGTGCATCGTTGTACACGCTCCAGGAGATGTATC 844
BSNT_02800___ 845 AAGGCTTCTTTTTGGCGCCTCACGTTGTGTCTCAAAGTTTAAAGGGAGCG 894
|.|||||.||..|.|||||.||.||.||.||.||....|||||.|||||.
BL03235___ynb 845 AGGGCTTTTTCCTTGCGCCGCATGTCGTCTCCCAGGCATTAAAAGGAGCA 894
BSNT_02800___ 895 GTGTTTACAGCGAGATTCCTTGAAAAACTCGGCTTCACTTCAAACCCGAA 944
|||||.|||||..|||||||.|||||.||||||||.|...|.||.||...
BL03235___ynb 895 GTGTTCACAGCCCGATTCCTCGAAAAGCTCGGCTTTAGGACGAATCCTTC 944
BSNT_02800___ 945 ATGGGATGCGAAAAGAACGGAC----TTAATACAATCCGTTGAGTTTTCA 990
||||| ||...||| ||||| ||.||.||.||.||.||.|||||
BL03235___ynb 945 ATGGG--GCAGCAAG--CGGACCGATTTGATCCAGTCTGTCGAATTTTC- 989
BSNT_02800___ 991 GACA-----GAGAAAAGATGATTGCTTTTTGCCAGGCTATTCAATTTGCA 1035
|| ||| .|||||||.||.|||||||||||.|||||.|..||.
BL03235___ynb 990 --CACCCCGGAG--CAGATGATCGCGTTTTGCCAGGCGATTCAGTACGCT 1035
BSNT_02800___ 1036 TCGCCAATCAATGCTCATGTGACGCCTTATCC-AGCCTACATGCCGGGAT 1084
||.||.||||||||.|||||||||||.||||| || |||.||||||||.|
BL03235___ynb 1036 TCTCCGATCAATGCCCATGTGACGCCGTATCCGAG-CTATATGCCGGGCT 1084
BSNT_02800___ 1085 ACGAGGATGATGTCATTATGGCAGCAGGCACGTTTATTCAAGGAGCAAGC 1134
|.||.||.||||||||||||||.||||||||.||..|.||.|||||||||
BL03235___ynb 1085 ATGAAGACGATGTCATTATGGCTGCAGGCACTTTCGTACAGGGAGCAAGC 1134
BSNT_02800___ 1135 ATCGAATTATCAGCTGATGGCCCTATCCGCCCGCCGTATGTAGCGTATGT 1184
||.|||||||||||.|||||||||||..|.|||||.|||||.||||||||
BL03235___ynb 1135 ATTGAATTATCAGCGGATGGCCCTATAAGACCGCCTTATGTGGCGTATGT 1184
BSNT_02800___ 1185 TCAGGGAGGATTGACCTATTCGCATGTGAAGAATGCCATATGCAGTGCAG 1234
.||.||.|||||.|||||.||.||||||||.|||||.|||||||||||.|
BL03235___ynb 1185 CCAAGGCGGATTAACCTACTCCCATGTGAAAAATGCGATATGCAGTGCTG 1234
BSNT_02800___ 1235 TGGATTCATTGATGGAAAAGCA---ATTAATTTAA 1266
|||||.|..|.||| ||||| ||||||.|||
BL03235___ynb 1235 TGGATGCGCTCATG---AAGCAGGGATTAATGTAA 1266
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