Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01502 and BL03205
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_01502___ssuA.1.5803.seq
# -bsequence dna-align/BL03205___ssuA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01502___ssuA-BL03205___ssuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01502___ssuA-BL03205___ssuA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01502___ssuA
# 2: BL03205___ssuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1063
# Identity: 733/1063 (69.0%)
# Similarity: 733/1063 (69.0%)
# Gaps: 137/1063 (12.9%)
# Score: 2492.0
#
#
#=======================================
BSNT_01502___ 1 ATGAAAAAAGGACTCATTGTA-----TTGGTTGCCGTTATTTTTCTGCTC 45
.||||||||.|.| |.||||| |.||.|||| |.||.||.||.
BL03205___ssu 1 GTGAAAAAATGGC-CGTTGTATGTGCTGGGCTGCC----TGTTGCTTCTT 45
BSNT_01502___ 46 GCAGGCTGTGGAGCAAATGGAGCCAGCGGTGACCACAAACAATTGAAGG- 94
||.||||||..||| ||||| ||.|||.||||||
BL03205___ssu 46 GCGGGCTGTTCAGC------AGCCA-----------AATCAAGTGAAGGG 78
BSNT_01502___ 95 ---------------------AAATTCGTATTGGTATTCAGCAAAGCTTA 123
||..|||.|.|| ||||||||||||
BL03205___ssu 79 GGCGGAGATTTAAAAGAGATCAACATCGGAGTG-----CAGCAAAGCTTA 123
BSNT_01502___ 124 AGCCCGCTTTTGATC---GCAAAAGAAAAAGGCTGGTTCGAAGATGCATT 170
|||||| |||.|| ||.|||||||||||||||||.|||.|.|..||
BL03205___ssu 124 AGCCCG---TTGCTCCTTGCGAAAGAAAAAGGCTGGTTTGAAAAAGAGTT 170
BSNT_01502___ 171 TGAAAAAGAAGGCATCAAAGTGAAATGGGTGGAGTTTCAAAGCGGTCCGC 220
.|.|||||||||.||.||||||||||||...|||||||||||||||||||
BL03205___ssu 171 CGCAAAAGAAGGAATTAAAGTGAAATGGACAGAGTTTCAAAGCGGTCCGC 220
BSNT_01502___ 221 CCCAATTTGAAGGCCTTGCGGCAGACAAACTTGATTTTTCTCAAGTCGGT 270
|.||.||||||||.|||||.||.||.|||||.||||||||.||||||||.
BL03205___ssu 221 CGCAGTTTGAAGGTCTTGCCGCGGATAAACTCGATTTTTCCCAAGTCGGA 270
BSNT_01502___ 271 AATTCGCCTGTGATCGCTGGACAGGCGGCAGGCATTGACTTTAAAGAAAT 320
|||||.||.||||||||.||.||||||||.||||||||.|||||||||||
BL03205___ssu 271 AATTCACCGGTGATCGCAGGGCAGGCGGCTGGCATTGATTTTAAAGAAAT 320
BSNT_01502___ 321 CGGTTTGTCTCAGGACGGCTTGAAAGCAAACGGCATCCTTGTCAATCGAA 370
|||..|.|||||.|||||.||.||.||.||||||||.|||||.|| ||
BL03205___ssu 321 CGGCCTTTCTCAAGACGGTTTAAAGGCGAACGGCATTCTTGTGAA---AA 367
BSNT_01502___ 371 A---CAGCGGCATTCAAGACGTTAAGGGCTTAAAGGGGAAGAAAATTGCA 417
| .|||||.||..|.|||.|.||.|..||.||.||.|||||..|.||.
BL03205___ssu 368 AAGGGAGCGGAATCGATGACATAAAAGATTTGAAAGGAAAGAAGGTGGCG 417
BSNT_01502___ 418 GTCGCCAAAGGCAGCAGCGGGTTTGATTTTTTGTATAAAGCGCTTGATCA 467
||.||.|||||||||||||||||.|||||..|||||||||.|.|.|||.|
BL03205___ssu 418 GTGGCAAAAGGCAGCAGCGGGTTCGATTTCCTGTATAAAGTGATCGATAA 467
BSNT_01502___ 468 AGTGGGGTTGTCAGCTAAC-GATGTGACAATTATTCAGCTTCAGCCTGAT 516
||.|||..|| .|||.||| ||.||.|..||.|||||||||||||||||.
BL03205___ssu 468 AGCGGGTCTG-AAGCCAACAGACGTCAACATCATTCAGCTTCAGCCTGAC 516
BSNT_01502___ 517 GAAGCAGCTT--CCGCATTTGAAAACGGATCTGTTGATGCCTGGTCCATT 564
||||| |.| |.||||||||.|.||||.|..||||.||||||||.|||
BL03205___ssu 517 GAAGC--CATGCCGGCATTTGACAGCGGAGCGATTGACGCCTGGTCGATT 564
BSNT_01502___ 565 TGGGAGCCGTACTTGTC-CTTAGAAACAATGAA-----ACACGGAGCAAA 608
||||||||||..||||| |||| ||||.||.|| ||.|||| ||.|
BL03205___ssu 565 TGGGAGCCGTTTTTGTCTCTTA-AAACGATCAAAAGTGACGCGGA-CATA 612
BSNT_01502___ 609 AATCCTTG--TGAACGGAGAAAGCACAGATTTA----TATTCACCGGGTT 652
||| || ||||.|| |||.||..| |||||.|||||||
BL03205___ssu 613 -----TTGGTTG-ACGGGGA----ACAAATCGACAAGTATTCCCCGGGTT 652
BSNT_01502___ 653 TTACTTTAGTAAGAA-CAAAGTTTTCAGAAGAGCATCCAGACGAAGTGGT 701
||||..|.|||.||| |||| ||..|.|||.|||||||.||.||.|||.|
BL03205___ssu 653 TTACGCTTGTACGAAGCAAA-TTCGCCGAACAGCATCCGGATGAGGTGAT 701
BSNT_01502___ 702 CCGTTTTCTGAAGGTGTTTAATAAAGCCGTTGTATGGCAAAAGGAA--CA 749
.||||||||||||||||.|.|.||.|||||...||||||.|| || ||
BL03205___ssu 702 TCGTTTTCTGAAGGTGTATGACAAGGCCGTGAAATGGCAGAA--AACCCA 749
BSNT_01502___ 750 TCTGGGTGAAGC------AGCGGACTTATATTCTGACATTAAAGATCTCG 793
|..|...||||| |||| ||..|..|.||||||.|.||||
BL03205___ssu 750 TAAGAAAGAAGCGGTTGAAGCG------TACGCAAAAATTAAAAACCTCG 793
BSNT_01502___ 794 ATAAAAAGGTCGTCGAAAATGTGCTGAAAAATACTGAACCTCTGAATGAG 843
|.|||.|||||||.|||||.||||||||.||.||.|||||..|.||||||
BL03205___ssu 794 ACAAAGAGGTCGTTGAAAACGTGCTGAATAACACCGAACCGTTAAATGAG 843
BSNT_01502___ 844 GTCATCAGTGACGACATTGTAAAAGCGCAGCAGGAAACAGCAGATTTTCA 893
...||||..|||..|||..|..||.|.||||||||.||.||.||||||||
BL03205___ssu 844 CCGATCACAGACCGCATCATTCAAACACAGCAGGAGACCGCCGATTTTCA 893
BSNT_01502___ 894 ATTTCGAAC-----AAAGGCGATAGATAAGAAGATTGATGTGAAGGATGT 938
|| || |||.|||||..|.||..||||||||||.||.||.||
BL03205___ssu 894 AT-----ACAAATTAAAAGCGATTAACAAAGAGATTGATGTAAAAGAAGT 938
BSNT_01502___ 939 TGTCGATAA--CAGTTTTATCAAAAAAGCATTAAAGGAACATTCCTCAGG 986
.|||||.|| || |||||.||||||||..|.||.|| |||
BL03205___ssu 939 GGTCGACAATTCA--TTTATAAAAAAAGCGCTGAAAGA---------AGG 977
BSNT_01502___ 987 AGGTGATCAATGA 999
||.|||..|||||
BL03205___ssu 978 AGATGACAAATGA 990
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