Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01518 and BL03192

See Amino acid alignment / Visit BSNT_01518 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:00
# Commandline: needle
#    -asequence dna-align/BSNT_01518___yhbE.1.5803.seq
#    -bsequence dna-align/BL03192___yhbE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01518___yhbE-BL03192___yhbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01518___yhbE-BL03192___yhbE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01518___yhbE
# 2: BL03192___yhbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 802
# Identity:     449/802 (56.0%)
# Similarity:   449/802 (56.0%)
# Gaps:         179/802 (22.3%)
# Score: 960.5
# 
#
#=======================================

BSNT_01518___      1 ATGGATGTAGTGGAAAAGCTGGTGATAAACGGATCAGGAAGTTCAAAGGG     50
                              .||||.||..|..||||||||||||..||.||||||...||
BL03192___yhb      1 ---------ATGGAGAATTTATTGATAAACGGATTCGGCAGTTCAGGCGG     41

BSNT_01518___     51 AGGAACATTTCAATCTGTTGAGATTAATGGCAGCGGGACAGTGGCCGGGG    100
                     |||..|.|.||||.|.||||||.|.||.||||..||.||..|...|||.|
BL03192___yhb     42 AGGCGCGTATCAAACGGTTGAGTTAAACGGCAAAGGTACGATTAACGGCG     91

BSNT_01518___    101 ACGTGGAGTGTGACACTTT----TTCTTTTAATGGAAACGGAAAAGTCGA    146
                     |..|.||.||.||.|..||    |.|    |..||.|.|||.|..||..|
BL03192___yhb     92 ATATTGACTGCGAAAGGTTCAGCTGC----AGCGGCACCGGGACTGTAAA    137

BSNT_01518___    147 CGGCAG-CGTCAAAGCGAAAGCGGTAACCATCAGCGGTTCA-GGAAAGAT    194
                     ||| || |||.||||||.|.|.|.|.|..|||||||| .|| |.|||..|
BL03192___yhb    138 CGG-AGACGTAAAAGCGGATGAGCTGAGAATCAGCGG-CCATGCAAAACT    185

BSNT_01518___    195 ACATGGAGACGTTGAAGC----------AGAATCTA----TCCGGA----    226
                     |.|.||.|.|.|.||.||          |||||..|    ||.|.|    
BL03192___yhb    186 AAACGGCGCCATCGAGGCTTCAAAGGTTAGAATTGATGGTTCTGCAAAAG    235

BSNT_01518___    227 TGAATGGCACTGGTTTTATTC-AAGGAGAGGTATCTGCAAAACAATTGAA    275
                     ||.|||||..||       || |||.|||         |||.|   |.||
BL03192___yhb    236 TGGATGGCGATG-------TCGAAGCAGA---------AAAGC---TTAA    266

BSNT_01518___    276 AAT---------CGCTGGATCATCAACATTTGGCGGCAC-TGT-CAAGGC    314
                     |||         |||.||        || ||.|||| || ||| .|||||
BL03192___yhb    267 AATCTTAGGCTACGCCGG--------CA-TTAGCGG-ACATGTGAAAGGC    306

BSNT_01518___    315 TGATG--GCATTGA-CATTAGCGGAAAAGCTGTC-ATGGAAGC--AGATT    358
                      ||.|  ||   || |.||.||||||||.| ||| ||.|  ||  |||.|
BL03192___yhb    307 -GACGAAGC---GATCGTTCGCGGAAAAAC-GTCGATCG--GCAAAGACT    349

BSNT_01518___    359 -----GTGAAACAGAAACCTTTCAAT-CAGAAGGGAAATGCAAAATCAGC    402
                          |||.||||      |||...| |||||||..|.|..|.||||..|
BL03192___yhb    350 GCCAAGTGGAACA------TTTTTCTGCAGAAGGCTATTTTACAATCGAC    393

BSNT_01518___    403 GGGCTTTTAAATGCAGACCAGGTGATC---ATTAAGCTTTCTGCA----G    445
                     |||||.|||||.||.||.||   .|||   ||||||.||    ||    |
BL03192___yhb    394 GGGCTGTTAAACGCGGAGCA---AATCGAAATTAAGGTT----CACGGCG    436

BSNT_01518___    446 GGGAAAGCTATGTGCGGGAGATCGGCTGCCG--CCATCTTCAAGTGACCT    493
                     |.|||||..|.|||...||.|||||||||||  ..|||.||   ||..||
BL03192___yhb    437 GCGAAAGTAAAGTGAAAGAAATCGGCTGCCGGAGGATCGTC---TGCACT    483

BSNT_01518___    494 GCAGA--AAAGGAATGCTGACATTGCTCAGATTAATGCCGCAGCCTGTT-    540
                     |||.|  ||..||| ||||    |.|||...||.||  ||.|||.|.|| 
BL03192___yhb    484 GCACATCAATCGAA-GCTG----TTCTCGTTTTTAT--CGGAGCTTATTT    526

BSNT_01518___    541 -----------CTAACAGCAGAGCTGATCGAAGGTGA-CGTGATTGAA-T    577
                                ||..|.||.||||||||.|||||.|| |.| ||.||| |
BL03192___yhb    527 CTCCTCCAAGGCTGTCTGCCGAGCTGATTGAAGGGGATCAT-ATCGAACT    575

BSNT_01518___    578 TGACAAATACAAAGGCGAAAACCGTGCGCGGAAATAAAGTGGTCATCGGC    627
                     || |.|||||.|..||.|||...||.|||||.|||...||..||||||||
BL03192___yhb    576 TG-CCAATACGACCGCAAAAGTTGTCCGCGGCAATTCGGTTATCATCGGC    624

BSNT_01518___    628 CCGGATT---------GCCAGATTGAAACCGTCGAATACAGTGGGGACTA    668
                     ....|||         |||.||||||       |.||| || |..|| ||
BL03192___yhb    625 GAAAATTGCGACATCGGCCTGATTGA-------GTATA-AG-GAAGA-TA    664

BSNT_01518___    669 TACCTGTGATCCAAGCG-----CGTCGG-TTGAAACATCCACAAAGTTGT    712
                     |.|..|||..|.||.||     .||||| ..||||     |..||.||.|
BL03192___yhb    665 TCCGGGTGGCCGAAACGGCAAAAGTCGGAGAGAAA-----AGGAAATTAT    709

BSNT_01518___    713 AA    714
                     |.
BL03192___yhb    710 AG    711


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