Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01544 and BL03177
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_01544___yhcL.1.5803.seq
# -bsequence dna-align/BL03177___yhcL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01544___yhcL-BL03177___yhcL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01544___yhcL-BL03177___yhcL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01544___yhcL
# 2: BL03177___yhcL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1438
# Identity: 1055/1438 (73.4%)
# Similarity: 1055/1438 (73.4%)
# Gaps: 98/1438 ( 6.8%)
# Score: 3896.5
#
#
#=======================================
BSNT_01544___ 1 TTGGAGACTTTACTGGTTGTATTACATGTATTTATT-TTATTTTTACTTA 49
||.|||| |||||.|| |||||..|| |||
BL03177___yhc 1 --------------------ATGACAT-TATTTGTTGTTATTAATA-TTA 28
BSNT_01544___ 50 TCTTAGGGCTC------------------TTTGTTATGCAGAAAAAACAT 81
||.|...|||| |.|.|.|||||.|||||.|||
BL03177___yhc 29 TCGTCATGCTCGGCCTGATGGCGCTCCTTTATATGATGCAAAAAAAGCAT 78
BSNT_01544___ 82 GTTTCCTTCTCTAAACGTGTATTTACTGCGCTGGGGCTGGGGATTGTATT 131
|||||.||.|||||.||.||||||||.||.|||||..|.||.|||||.||
BL03177___yhc 79 GTTTCTTTTTCTAAGCGGGTATTTACCGCTCTGGGAATCGGAATTGTTTT 128
BSNT_01544___ 132 CGGATTTGCGCTT--CAGCTGATTTACGGCCCGACTTCAAATATAGTC-A 178
.||||| ||||| ||..|.||.||.||..||.|||||.|.| | |
BL03177___yhc 129 TGGATT--CGCTTTGCATTTTATATATGGTTCGTCTTCAGAAA----CGA 172
BSNT_01544___ 179 TT---CAAACAGCCGACTGGTTTAATATTGCCGGGGGCGGATATGTCAAA 225
|| ||.||..|.||.|||||||||||.||.||.|||||.||||||||
BL03177___yhc 173 TTACGCAGACTTCTGATTGGTTTAATATCGCAGGCGGCGGCTATGTCAA- 221
BSNT_01544___ 226 TTGCTT---CAGATGGTTGTCATGCCGCTCGTCTTTATTTCGATTCTCGG 272
|||| ||||||.|.||.||||||||.||.||.||.||||||.|.||
BL03177___yhc 222 --GCTTTTGCAGATGATCGTTATGCCGCTTGTATTCATCTCGATTTTGGG 269
BSNT_01544___ 273 CGCCTTTACAAAGCTGAAGCTGACAAAAAATCTTGGGAAAATCAGCGGTT 322
.||.|||||||||||.||||||||..|.|||.|.||.|||||||||||.|
BL03177___yhc 270 TGCTTTTACAAAGCTTAAGCTGACGCACAATATCGGAAAAATCAGCGGAT 319
BSNT_01544___ 323 TGATTATCGGGATTTTAGTAGCAACAACAGCAGTTGCTGCAGCTGTCGGT 372
||||.||||||.|.|||.|.||.||.|||||.||.|||||.||.||.|||
BL03177___yhc 320 TGATCATCGGGCTCTTAATCGCGACGACAGCCGTCGCTGCTGCGGTGGGT 369
BSNT_01544___ 373 ATCGCGTCCGCGCTTTCATTTGATCTGCAGGCGATTCAGGTTGACCAAGG 422
|||||||||||||||.|.||.||.||||||||..|.||.||.||||||||
BL03177___yhc 370 ATCGCGTCCGCGCTTGCTTTCGACCTGCAGGCCGTCCATGTGGACCAAGG 419
BSNT_01544___ 423 AAGTACAGAGCTTTCACGGGGACA-----------GGAGCTTCAGCAGAA 461
.||| .|||.|||| |||.||..|.|||||
BL03177___yhc 420 ----CCAG-------GCGGAGACAATGAGAGGGGCGGAACTCGAACAGAA 458
BSNT_01544___ 462 ATCAGAGGATATGACAGCGAAAACGCTGCCGCAGCAGATTGTTGAACTGC 511
|||..||||.|||..|||.||||||||.||||||||.|||||.||.||.|
BL03177___yhc 459 ATCGCAGGACATGGAAGCCAAAACGCTTCCGCAGCAAATTGTCGAGCTTC 508
BSNT_01544___ 512 TGCCTGGAAACCCGTTTTTAGATTTCACGGGAGCTAGACCGACTTCAACA 561
|.||||||||.|||||||||||.||.||.|||||.||||||||.|||||.
BL03177___yhc 509 TTCCTGGAAATCCGTTTTTAGACTTTACTGGAGCAAGACCGACATCAACG 558
BSNT_01544___ 562 ATCGCTGTCGTTATTTTTGCCGCTTTCCTTGGAGTGGCATTCCTCGGAGT 611
|||||.||.|||||||||||.|||||||||||..|.||.|..|||||.||
BL03177___yhc 559 ATCGCAGTTGTTATTTTTGCGGCTTTCCTTGGGATCGCTTATCTCGGGGT 608
BSNT_01544___ 612 AAAACACAAACAGCCGGAACAGGCAGAAACATTT-AAAAAACTGGTTGAT 660
.||.|..||||||||.|||||.||.| |||.||| ||||||.||||||||
BL03177___yhc 609 CAACCGAAAACAGCCTGAACAAGCTG-AACTTTTCAAAAAAATGGTTGAT 657
BSNT_01544___ 661 GCCGTTTATGCCATTGTCATGCGTGTTGTCACACTCATTTTGAGACTGAC 710
|||||.|||||.||..|.||||||||.|||||..|.|||.||||..||||
BL03177___yhc 658 GCCGTGTATGCGATCATTATGCGTGTGGTCACCTTAATTCTGAGGTTGAC 707
BSNT_01544___ 711 GCCTTATGGGGTGCTGGCCATCATGACAAAAACAATTGCCACGAGTGATC 760
||||||.||.||..||||.||||||||||||||.|||||.|||||.||.|
BL03177___yhc 708 GCCTTACGGTGTATTGGCGATCATGACAAAAACGATTGCAACGAGCGACC 757
BSNT_01544___ 761 TTGACAGCATTCTAAAACTGGGCATGTTCGTGATTGCTTCATATGCCGCG 810
|.|||||||||...|||||.||||..||.||.||.|||||||||||.|||
BL03177___yhc 758 TCGACAGCATTGCCAAACTCGGCAAATTTGTCATCGCTTCATATGCGGCG 807
BSNT_01544___ 811 TTAATCACTATGTTTATCATTCATTTGCTGCTGCTGACGTTCAGCGGCTT 860
.|.|||...|||||.||||||||..|||||||..|.||.||||||||.||
BL03177___yhc 808 CTGATCGTCATGTTCATCATTCACCTGCTGCTCATTACATTCAGCGGTTT 857
BSNT_01544___ 861 GAATCCGGTGATTTATTTGAAAAAAGCGGTGCCTGTACTTGTATTTGCAT 910
.|||||.||.|..||.||||||||.|||.|.||.||.||||||||.||.|
BL03177___yhc 858 AAATCCTGTCACATACTTGAAAAAGGCGTTTCCAGTTCTTGTATTCGCGT 907
BSNT_01544___ 911 TTACGTCAAGGTCTAGCGCAGGTGCTTTACCGCTGAATATTAAAACACAG 960
||||.|||||.||.||||||||.|||||.||||||||.||||||||.|||
BL03177___yhc 908 TTACATCAAGATCAAGCGCAGGCGCTTTGCCGCTGAACATTAAAACGCAG 957
BSNT_01544___ 961 AGAAGCATGGGTGTACCGGAGGGAATCGCAAACTTTGCCGGTTCGTTCGG 1010
.|||||.|.|||||.||.||.||.||.||.|||||||||||.||.|||||
BL03177___yhc 958 CGAAGCCTTGGTGTTCCAGAAGGCATTGCGAACTTTGCCGGATCCTTCGG 1007
BSNT_01544___ 1011 TCTTTCGATCGGCCAAAATGGATGTGCCGGCATTTATCCTGCGATGCTGG 1060
.||.||.|||||.|||||.|||||||||||||||||.|||||.|||||.|
BL03177___yhc 1008 ACTGTCCATCGGTCAAAACGGATGTGCCGGCATTTACCCTGCAATGCTCG 1057
BSNT_01544___ 1061 CGATGATGATTGCTCCGACTGTCGGCCAAAATCCATTTGACCCGGTGTTT 1110
||||.|||||.||.||||||||||||||||||||..||||.|| ||..||
BL03177___yhc 1058 CGATTATGATCGCGCCGACTGTCGGCCAAAATCCGCTTGATCC-GTCATT 1106
BSNT_01544___ 1111 ATT-ATCACTGTTATCGCAGTCGTTGCCATCAGCTCCTTCGGTGTTGCCG 1159
.|| .||||.|||||||||||.|||||.||||||||.|||||.||.||.|
BL03177___yhc 1107 CTTGTTCACGGTTATCGCAGTTGTTGCGATCAGCTCTTTCGGAGTGGCAG 1156
BSNT_01544___ 1160 GAGTCGGCGGCGGAGCCACATTCGCGGCGCTTCTTGTTTTATCATCATTA 1209
|.||||||||.||.||.||.||.||.||||||||.||..|.||..|||||
BL03177___yhc 1157 GCGTCGGCGGAGGTGCGACCTTTGCAGCGCTTCTCGTCCTTTCGGCATTA 1206
BSNT_01544___ 1210 AACATGCCTGTCGCGCTTGCTGGTTTGTTAATCTCAATTGAACCGTTAAT 1259
|||||||||||.||||||||.||..|..|.||.||..||||.|||.|.||
BL03177___yhc 1207 AACATGCCTGTAGCGCTTGCCGGACTTCTGATTTCTGTTGAGCCGCTGAT 1256
BSNT_01544___ 1260 CGACATGGGGCGTACTGCTTTGAATGTCAGCGGAAGCATGACATCCGGTC 1309
|||||||||||||||.|||.|.|||||||||||.||||||||.||.||.|
BL03177___yhc 1257 CGACATGGGGCGTACGGCTCTCAATGTCAGCGGCAGCATGACGTCAGGAC 1306
BSNT_01544___ 1310 TTATTACAAGTAAGGTCACAAAGGAAATTGATCAAGGGGCATTTCATGAT 1359
||.|.||.||.||.||.|||||.||..||||..|||...|.|..||.||.
BL03177___yhc 1307 TTGTCACGAGCAAAGTGACAAATGAGCTTGAAAAAGACACGTACCAAGAC 1356
BSNT_01544___ 1360 C-----AATCCAGAGTGATTGAAGCTGAAGAAGCGTAA 1392
| ||| .|.|||||||| |||||.||||
BL03177___yhc 1357 CGTACAAAT-----ATCATTGAAGC---AGAAGTGTAA 1386
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