Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01582 and BL03176
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:02
# Commandline: needle
# -asequence dna-align/BSNT_01582___yhcN.1.5803.seq
# -bsequence dna-align/BL03176___yhcN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01582___yhcN-BL03176___yhcN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01582___yhcN-BL03176___yhcN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01582___yhcN
# 2: BL03176___yhcN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 654
# Identity: 369/654 (56.4%)
# Similarity: 369/654 (56.4%)
# Gaps: 171/654 (26.1%)
# Score: 990.0
#
#
#=======================================
BSNT_01582___ 1 ATGCT-----TGGAAAAAAA----CAAGTTCTTGCGTCTGTGCTTCTTAT 41
|||.| || |||||| |.| ||||..||.||||.|||
BL03176___yhc 1 ATGTTCAATATG--AAAAAAGGCGCGA----TTGCTGCTTTGCTCCTT-- 42
BSNT_01582___ 42 CCCTTTGCTTATGA---CTGGCTGCGGTGTGGCCGACCAAGGTGAGGGCA 88
||..||||..|.| |.||.|||||..||||..|||||| |||||
BL03176___yhc 43 -CCGCTGCTGTTCACAGCCGGATGCGGCATGGCAAACCAAG----GGGCA 87
BSNT_01582___ 89 GACGTGATAATAATGATGTAAGAAATGTAAACTATCGAAATCCGGC-CAA 137
|| |||.|| ||||| |||
BL03176___yhc 88 GA----------------TAACAA-----------------CCGGCGCAA 104
BSNT_01582___ 138 TGACGA-TATGCGC-----AATGTAAACAACCGGGATAATGTTGACAAC- 180
|.|.|| .|||||| |||||||..|||.|.|||||.|..| |.||
BL03176___yhc 105 TCAGGACAATGCGCTTCAAAATGTAACAAACAGAGATAACGACG-CTACG 153
BSNT_01582___ 181 AATGTTACTGA------TAATGTCAATAAC--AATAA------------- 209
|||||.|.||| .|||||||||.|| |||.|
BL03176___yhc 154 AATGTCAATGACGGCAGAAATGTCAATGACCGAATGAATGTGACAGACAA 203
BSNT_01582___ 210 ---------CAATCGTGTAAATGACGATAATAACAACGACCGGAAACTCG 250
|||||||| |.|||.|||||| |.|
BL03176___yhc 204 CCGCGATGCCAATCGTG---AAGACAATAATA---------------TGG 235
BSNT_01582___ 251 AGGTTGCTGATGAAGCAGCTGATAAAGTAACAGACCTAAAAGAAGTAAAA 300
|.||.||.|||.||||.||.||||||||..|.||.||.||||||||
BL03176___yhc 236 AAGTGGCGGATAAAGCCGCAGATAAAGTGGCGGAACTTAAAGAAGT---- 281
BSNT_01582___ 301 CA----TGCCGATGTCATTGTTGCTGGAAATC---AAGCTTACGTTGCAG 343
|| |||..|.||.| ||.|...|||.| |.|||||.||.||.|
BL03176___yhc 282 CAGTAGTGCAAACGTGA---TTACGACAAACCGCAACGCTTATGTCGCGG 328
BSNT_01582___ 344 TCGTTTTAACTAATGGAAAT---AAAGGTGCAGTAGAAGACAATTTGAAG 390
||||||| .||.||.||| ||||| |||.||||.|
BL03176___yhc 329 TCGTTTT---GAAAGGCAATCCGAAAGG------------CAACTTGACG 363
BSNT_01582___ 391 AA------------AAAAATAGCCAAAAAGGT--AAGATCTACTGACAAA 426
|| .|||||..|.|||||||| |||| .||.|||||.
BL03176___yhc 364 AATGAGCTGAAAGGGAAAATCTCGAAAAAGGTTAAAGA--AACAGACAAT 411
BSNT_01582___ 427 AACATTGATAATGTTTACGTTTCAGCTAACCCTGATTTTGTAGAGCGTAT 476
|||||..|.|||||.|.||||||.||.||||||||.|||||.||.||.||
BL03176___yhc 412 AACATCAACAATGTGTTCGTTTCGGCAAACCCTGACTTTGTTGACCGGAT 461
BSNT_01582___ 477 GCAAGAA--TATGGAAAGCGTATTCAAAAGGGTGACCCAATCGCCGGATT 524
| |||| |||||..|..|.||||||||.||.||.||.||||..|||.|
BL03176___yhc 462 G--AGAAACTATGGCGACAGAATTCAAAATGGCGAACCGATCGAAGGACT 509
BSNT_01582___ 525 ATTTGATGAATTTATACAAAC--TGTACAGCGCGTATTCCCTAACCCTGA 572
.|||||.||||||....|||| |..||| |..|.||.||.||.|....
BL03176___yhc 510 TTTTGAAGAATTTGGTGAAACGATCAACA--GAATTTTTCCGAATCAAAG 557
BSNT_01582___ 573 ATAA 576
||||
BL03176___yhc 558 ATAA 561
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