Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01586 and BL03172
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_01586___yhcS.1.5803.seq
# -bsequence dna-align/BL03172___yhcS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01586___yhcS-BL03172___yhcS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01586___yhcS-BL03172___yhcS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01586___yhcS
# 2: BL03172___yhcS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 644
# Identity: 414/644 (64.3%)
# Similarity: 414/644 (64.3%)
# Gaps: 100/644 (15.5%)
# Score: 1265.5
#
#
#=======================================
BSNT_01586___ 1 GTGAAA--AAAGTTATTCCACTATTCATCATTGCTGCCGGCCTAGTGATC 48
.||||| .|||.|.|| |||.||.||| ||..||||.
BL03172___yhc 1 ATGAAAGTCAAGATGTT---------ATCGTTTCTG-----CTGATGATA 36
BSNT_01586___ 49 GCAGG---------------CTATGGAGGCTTTAAATTGATCGATACGAA 83
||.|| .||.||.||||..|||.|..||||||.|||
BL03172___yhc 37 GCGGGGCTTGCCACTTTTGCATACGGCGGCTGGAAAATATTCGATATGAA 86
BSNT_01586___ 84 TATGA-AAACGG----------AACAGACACTAAAAGAAGCAAAACTTGC 122
.| || |.|||| |||.|| |..|||||||||.| ||||
BL03172___yhc 87 CA-GACAGACGGATCTTTCTTTAACTGA-AGCAAAAGAAGCCA---TTGC 131
BSNT_01586___ 123 GGCTGA--AAAGCCGCAGGAACCTTTGGGGACGAAAAATAGCACAGATCA 170
..| || .||.|||| ||.||.|| |.| |||||..|||
BL03172___yhc 132 ATC-GAGTCAATCCGC-----CCGTTCGG--CTA-----AGCACCCATC- 167
BSNT_01586___ 171 AGCAAAGAACAAAGCATCATTTAAGCCTGAGACCGGACAAGCGAGC-GGC 219
.|| |..| ||.|||||||||||.|...||||..||||| || |||
BL03172___yhc 168 GGC---GCCC---GCTTCATTTAAGCCCGCCGCCGGCGAAGCG-GCAGGC 210
BSNT_01586___ 220 ATTTTAGAAATACCGAAAATCAATGCAGAGCTTCCGATCGTGGAGGGCAC 269
||..|..|.||.||.|||.|....|||||||||||.|||||.||.||.||
BL03172___yhc 211 ATACTCCATATTCCCAAACTGGGCGCAGAGCTTCCCATCGTTGAAGGGAC 260
BSNT_01586___ 270 CGATGCTAATGATTTAGAAAAAGGTGTCGGGCATTACAAGGACAGCTATT 319
|..|.|..|||||||.||||||||.|||||.|||||.||.|.||||||||
BL03172___yhc 261 CAGTCCCGATGATTTGGAAAAAGGCGTCGGTCATTATAAAGGCAGCTATT 310
BSNT_01586___ 320 ATCCTGATGAAAACGGACAAATTGTGCTGTCAGGGCATCGGGATACCGTG 369
||||..|..|||||||.||||||||.||.|||||.||..|||||||.||.
BL03172___yhc 311 ATCCAAAACAAAACGGGCAAATTGTTCTTTCAGGCCACAGGGATACGGTT 360
BSNT_01586___ 370 TTTCGCCGGACGGGAGAGCTGGAAAAGGGGGATCGGCTCCGCA------- 412
||||||.|.||.||.||||||||||..||.|||..||| |.|
BL03172___yhc 361 TTTCGCAGAACAGGGGAGCTGGAAATCGGAGATAAGCT--GAAAATCGAG 408
BSNT_01586___ 413 -TTCTCCTGTCATATGGAGAATTCACATATGAAATTGTAAAAACAAAAAT 461
||| ||||.|||...|||..|||||||||...|.|.||.|||||
BL03172___yhc 409 CTTC------CATACGGAAGCTTCGAATATGAAATCACACACACGAAAAT 452
BSNT_01586___ 462 TGTCGA--TAAGGATGACACATCTATTATCACGCTCCAGCATGAAAAGGA 509
|||.|| .||| ||||||.||.||.||||||||.||||.||||||.||
BL03172___yhc 453 TGTTGACCAAAG--TGACACGTCCATCATCACGCTGCAGCGTGAAAAAGA 500
BSNT_01586___ 510 AGAGCTGATTCTGACGACCTGCTATCCGTTTTCATACGTCGGAAATGCCC 559
|||||||.|..|.|||||.||||||||||||||.||..||||||||||.|
BL03172___yhc 501 AGAGCTGCTGTTAACGACATGCTATCCGTTTTCTTATATCGGAAATGCGC 550
BSNT_01586___ 560 CGAAGCGCTATATTATATATGGAAAACGAGTGACTTAA------ 597
|..|||||||||||||.||||.|||.|...||| ||
BL03172___yhc 551 CTGAGCGCTATATTATTTATGCAAAGCCGCTGA---AAGGATGA 591
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