Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01592 and BL03169
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_01592___yhcW.1.5803.seq
# -bsequence dna-align/BL03169___yhcW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01592___yhcW-BL03169___yhcW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01592___yhcW-BL03169___yhcW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01592___yhcW
# 2: BL03169___yhcW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity: 507/677 (74.9%)
# Similarity: 507/677 (74.9%)
# Gaps: 28/677 ( 4.1%)
# Score: 1861.0
#
#
#=======================================
BSNT_01592___ 1 GTGATTAAAGCGTTAATTTTTGATTTTGACGGGCTTATTCTAGATACAGA 50
.||||||||||..|.|||||||||||||||||.||||||.||||||||||
BL03169___yhc 1 ATGATTAAAGCAGTGATTTTTGATTTTGACGGTCTTATTTTAGATACAGA 50
BSNT_01592___ 51 AACACACGAATATGAGGTTCTTCAGGAAATATTTGAAGAGCACGGCTCAG 100
|||.|||||||||||.||.||.||||||||.|||||||||||||||||||
BL03169___yhc 51 AACGCACGAATATGAAGTGCTCCAGGAAATTTTTGAAGAGCACGGCTCAG 100
BSNT_01592___ 101 TGCTGCCGCTATCTGTCTGGGGAAAGGTCATCGGAACTGCTGCGGGTTTC 150
.||||||..|.||.||.||||||||.||||||||.||.||.||.||.|||
BL03169___yhc 101 AGCTGCCAATGTCGGTTTGGGGAAATGTCATCGGCACGGCCGCCGGATTC 150
BSNT_01592___ 151 CGGCCTTTTGAATATTTAGAAGAGCAGATCGGGAAAAAGCTGAACCATGA 200
|.|||.|||...|||.|.||.||.|||.|....|||||.|||.|||||||
BL03169___yhc 151 CAGCCGTTTTCTTATCTGGAGGAACAGCTGCAAAAAAAACTGGACCATGA 200
BSNT_01592___ 201 AGAGCTCACACAATTGAGAAGAGAGCGGTTCGCCAAACGCATGGAAACAG 250
|.|.||.||..||||||||..||||||.||..|.|||.|.|||||||..|
BL03169___yhc 201 ACAACTAACGAAATTGAGACAAGAGCGTTTTACGAAAAGAATGGAAAATG 250
BSNT_01592___ 251 AAAAAGCGAGACCTGGTGTCGAAGCGTATTTGAATGCGGCAAAGGATTTA 300
||||||||.|.||.|||||.|||||.||||||...|||||.||.||..|.
BL03169___yhc 251 AAAAAGCGCGCCCAGGTGTGGAAGCTTATTTGTCCGCGGCGAAAGAGCTC 300
BSNT_01592___ 301 GGCTTAAAAATAGGCCTTGCTTCCAGCTCTGATTATAAATGGGTGTCCGG 350
||.||||||||.||.||.||.||.|||||.||||||||||||||||||..
BL03169___yhc 301 GGTTTAAAAATCGGGCTGGCGTCAAGCTCAGATTATAAATGGGTGTCCCA 350
BSNT_01592___ 351 CCATTTGAAGCAAATCGGCCTGTTTGATGATTTTGAAGTTATTCA-AACG 399
.|||||.||.||||||||.||||..||||||||.||| |...||| ||||
BL03169___yhc 351 GCATTTAAAACAAATCGGTCTGTACGATGATTTCGAA-TGCATCAGAACG 399
BSNT_01592___ 400 GCTGATGATGTGGAAGAGGTGAAGCCGAATCCTGAGCTCTATTT---ATT 446
||.||||||||.||.||.||.||.|||||.||.||.|||||||| |..
BL03169___yhc 400 GCCGATGATGTTGAGGAAGTCAAACCGAACCCGGAACTCTATTTGAAAGC 449
BSNT_01592___ 447 GGCGGCAAAGAACCTCGGGGTATCGCCAGCGGAATGTCTCGCGTTTGAGG 496
||||| ||.| ||||||.||...|||.|.|||.||..|.||.||.||.|
BL03169___yhc 450 GGCGG-AATG--CCTCGGTGTGAAGCCTGAGGAGTGCATTGCATTCGAAG 496
BSNT_01592___ 497 ATTCTGTCAATGGTTCGATTGCTGCGAAACGTGCAGGAATGAAGTGTGTC 546
|.||||||||.||.||.||.||.||||||.|.||.||||||||.||||||
BL03169___yhc 497 ACTCTGTCAACGGATCAATCGCCGCGAAAAGAGCCGGAATGAAATGTGTC 546
BSNT_01592___ 547 ATTGTCCCGAATAAAGTAACGGGCACCTTGATGTTTGAAGACTATGATCA 596
|||||.|||||||||||||||...|.|.||.||||.||..|.|||||.||
BL03169___yhc 547 ATTGTACCGAATAAAGTAACGAAAAGCCTGCTGTTCGAGCATTATGACCA 596
BSNT_01592___ 597 CAGGCTTGAATCAATGGCGGAAATGGAGCTCGCCCTATTGCTTGATC--- 643
|.|.||.|||||||||||||||||||||||.| .|..|| |||||
BL03169___yhc 597 CCGCCTGGAATCAATGGCGGAAATGGAGCTGG---AACAGC-TGATCGAA 642
BSNT_01592___ 644 ---ATCT--GAAC--TCACAAAACTAG 663
|||| ||.| |||.||
BL03169___yhc 643 AAAATCTCCGATCCATCATAA------ 663
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