Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01509 and BL03166
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_01509___ygaO.1.5803.seq
# -bsequence dna-align/BL03166___ygaO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01509___ygaO-BL03166___ygaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01509___ygaO-BL03166___ygaO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01509___ygaO
# 2: BL03166___ygaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 518
# Identity: 314/518 (60.6%)
# Similarity: 314/518 (60.6%)
# Gaps: 103/518 (19.9%)
# Score: 905.5
#
#
#=======================================
BSNT_01509___ 1 ATGAGCATGAAAACAAAAGCAG-CT---TTTCACCTTGTTTTATTTGGCC 46
||||..||||.|||| |.| || ||||||.|..||.|.||.||.|
BL03166___yga 1 ATGAATATGATAACA----CGGACTTTCTTTCACATCCTTCTGTTCGGAC 46
BSNT_01509___ 47 TTGCATGCTGGGCG--------CTGATTTCATACTTTG------------ 76
|.|||||||||.|| ||..||.||.||.|.|
BL03166___yga 47 TCGCATGCTGGACGTTTATAACCTTTTTCCACACATCGGAACAAATTGCC 96
BSNT_01509___ 77 --AAGCCTCAGAAGACATAGCATCTTTTTTCGGCACAAAGAGCGGCGGGA 124
|||||| |||.|||.|..| ||| |||||..| |
BL03166___yga 97 AAAAGCCT--GAAAACAAACGA------TTC-------AGAGCTTC---A 128
BSNT_01509___ 125 TGGTATTTGATTTAAACCTCACTCCCTTTATTCTGTTTGTTGCGG--CGT 172
| ||||..||.||.||.|.||||.|..||||.|||| || |||
BL03166___yga 129 T----TTTGTGTTTAATCTGATTCCCATCCTTCTCTTTG----GGCTCGT 170
BSNT_01509___ 173 C--TGCGGTTTATTTGTCCTTACAGAAAAAAAGCCGCCCTGCCAGAAAGC 220
| |.||.||||....|.|||..|||||||||||.| |.|..|.||||
BL03166___yga 171 CCTTTCGATTTACACATACTTGGAGAAAAAAAGCGG---TTCACGCAAGC 217
BSNT_01509___ 221 AGC------TACTTCTGCCTGATGAGTTTGAAGAGCAGGATGAAAGAGAG 264
||| |.||..|.||.||.||.|||.||||||||||||||||||||
BL03166___yga 218 AGCGCTTTATGCTCGTCCCCGACGAATTTAAAGAGCAGGATGAAAGAGAG 267
BSNT_01509___ 265 CAGATGATGACGGCAAAAGCATGCCGCGCGTCATATATC--GCTGTCTAC 312
||||||||.||.||||||||||||.|..|.||||||||| |||| ||.
BL03166___yga 268 CAGATGATTACCGCAAAAGCATGCAGAACATCATATATCGTGCTG--TAT 315
BSNT_01509___ 313 TTCTCGCTGCCTGCCGCAGCGGTTCTTCTCATTTTTTATCCGCTATTTCA 362
.|..||.||||.|.|||||||.||.|..|.||.|||||||||.|.||.||
BL03166___yga 316 GTGGCGATGCCGGTCGCAGCGCTTTTATTGATCTTTTATCCGTTTTTCCA 365
BSNT_01509___ 363 A-TCGCGCATTCCGTTTTTCCCTATTATTATTGTGTTTATCATCATGATC 411
| || .|.|||||||.|||.||.|||||..|..|.|||||..|.||.||.
BL03166___yga 366 AGTC-AGGATTCCGTCTTTTCCGATTATCGTCATCTTTATGCTGATCATT 414
BSNT_01509___ 412 ATCCAGCACCTTTCCTACGTCATCTCTTTCA----AGAAAAAC-GAAAAA 456
||.|||||.|||||.|| .||.| ||||| |.|||||| ||.||
BL03166___yga 415 ATTCAGCATCTTTCATA---TATGT-TTTCATTTTATAAAAACAGATAA- 459
BSNT_01509___ 457 AACTCCGGCGCGCTGTAA 474
BL03166___yga 459 ------------------ 459
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