Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01513 and BL03164
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_01513___yhzB.1.5803.seq
# -bsequence dna-align/BL03164___yzhB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01513___yhzB-BL03164___yzhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01513___yhzB-BL03164___yzhB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01513___yhzB
# 2: BL03164___yzhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 753
# Identity: 401/753 (53.3%)
# Similarity: 401/753 (53.3%)
# Gaps: 252/753 (33.5%)
# Score: 999.5
#
#
#=======================================
BSNT_01513___ 1 ----------GTGAATATCAAACTTGATTCTGTTATTACTGAA--CGTGC 38
|| |..|||| |||...|||.|||| |.|| |||
BL03164___yzh 1 TTGGAACTTCGT---TTGCAAA-TTGCGCCTGCTATT--TTAAACCGT-- 42
BSNT_01513___ 39 GGCCGGCTTACATGCAGCTGCTGTCATTTA----------TGAG-AATAT 77
|| |.|| ||||||| ||.| .||||
BL03164___yzh 43 -----------AT-----TCCT-TCATTTAAGGTTGGCGCTGTGTTATAT 75
BSNT_01513___ 78 CGAAGT-----------CGGCTCCTCACCGCAAATGCTGAAAGGCAGACT 116
|.|.|| ||||||| |||||||||||.||||||.|.||
BL03164___yzh 76 CAAGGTATTGAGATCAACGGCTCC---CCGCAAATGCTTAAAGGCCGGCT 122
BSNT_01513___ 117 CCGCCTGTTTCAAGAATCCTTGTTTTTCGACTATGCGGACGGCGGTATAT 166
||||||.|||||.|||||..|||||||.||||||||.|||.||.||||..
BL03164___yzh 123 CCGCCTTTTTCAGGAATCGCTGTTTTTTGACTATGCCGACCGCAGTATCG 172
BSNT_01513___ 167 CCGATGAATCCTTCGTCAAGGAATGGCAGGAACTCTTTAAACAGCTTAAC 216
..||||||||...|||.||.||||||||.||...|||.|...||||.||.
BL03164___yzh 173 AAGATGAATCGGCCGTAAAAGAATGGCATGATGCCTTCAGGGAGCTGAAT 222
BSNT_01513___ 217 CCTTC-ATTTGAGG--GAGAAACAACCCCAATGGAGGAC--------ATG 255
||.|| .|||.||| |.|||| |.|||| |||
BL03164___yzh 223 CCGTCTTTTTCAGGCCGGGAAA-----------GCGGACTCGAACGGATG 261
BSNT_01513___ 256 CTGGTCCCGATATCCAAG-------------------GAACAATTCATGG 286
|||| ..||.|||.||| |||.|||
BL03164___yzh 262 CTGG--AAGACATCAAAGAGCAGCGCTTTGTCGAGCCGAAAAAT------ 303
BSNT_01513___ 287 AAAGTATAGACTCGGCCCATGACACAATC-GA----TTTTTTCGCATTAA 331
|||||...|| ||| || |||||||.|..|.|
BL03164___yzh 304 -----------TCGGCGGTTG-----ATCTGAGCCGTTTTTTCTCTCTCA 337
BSNT_01513___ 332 AATATTCTCTGCCTATT-ATGATTTATGATG-CCGGAAAGCTTCATG-AG 378
||||||...|.||..|| || ||.|||||.| |||||| || || ||
BL03164___yzh 338 AATATTTGATTCCGGTTCAT-ATATATGACGCCCGGAA---TT--TGAAG 381
BSNT_01513___ 379 CCGGTCCGGATCTCATTGGGAGAAAAA--------------------GAA 408
||||| |||| |||| ||.
BL03164___yzh 382 --GGTCC-GATC-----------AAAATCGAACCCGGCGGCCCGGACGAG 417
BSNT_01513___ 409 AACAT-ACTGCTTTTCTCTGATGA---------AAACGGCATTTTTGGCG 448
|.||| || .|||||.||||| |..||||| ||
BL03164___yzh 418 ATCATCAC----GTTCTCCGATGATGCGGGAGCATTCGGCA-------CG 456
BSNT_01513___ 449 ATTTCAAAAACAACGTCAACCACTATCCCGTTTCA---------AACGAG 489
|| ||.||..||||.|..|| |||| |.|| |
BL03164___yzh 457 AT--------CACCGAAAACCTCAGTC----TTCATCATGCAGGAGCG-G 493
BSNT_01513___ 490 ACTAAGAATATGC--TGCAAATCATTTTTTTCCCGCCATCGATT-----G 532
||..|.||.|||| ||||..||.|.||||||..|||.|| ||| .
BL03164___yzh 494 ACACAAAAGATGCCTTGCAGCTCGTCTTTTTCAGGCCGTC-ATTATCTAA 542
BSNT_01513___ 533 AGAA-AAG-CAGC--GCTGTTAACCTCTTATCATCATTAACGAAAATGTT 578
|||| ||| |||| |||| ||| .|| ||.||.||.||||||||
BL03164___yzh 543 AGAAGAAGCCAGCCGGCTG-----CTC-GAT--TCTTTGACAAAAATGTT 584
BSNT_01513___ 579 TGAACAAATTCACGGCGGCACCTATACAGTACATT------GGC-TTACG 621
|||||||||||||||||||| .|.||||| |.| ||.||
BL03164___yzh 585 TGAACAAATTCACGGCGGCA-------GGCACATTTCAGCCGTCTTTCCG 627
BSNT_01513___ 622 TAA 624
|||
BL03164___yzh 628 TAA 630
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