Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02947 and BL03137
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_02947___yndJ.1.5803.seq
# -bsequence dna-align/BL03137.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02947___yndJ-BL03137.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02947___yndJ-BL03137.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02947___yndJ
# 2: BL03137
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1896
# Identity: 1031/1896 (54.4%)
# Similarity: 1031/1896 (54.4%)
# Gaps: 504/1896 (26.6%)
# Score: 2488.0
#
#
#=======================================
BSNT_02947___ 1 ATGCAACGAAATGGCATAGTCAGTGCGC--TTTGTTTTATA--------- 39
||| |.||.| ||| ||| ||||.||
BL03137 1 ----------ATG--AAAGCC----CGCCGTTT-TTTTGTAAGCGTTCTT 33
BSNT_02947___ 40 --------GGATTTCTTGCAGCGG--AAGCACCGGATATTTCAGTGGCAG 79
|| |||.||.||.||| ||||.||||||||..|.|.|||||
BL03137 34 TGCTACGCGG-TTTTTTTCATCGGCAAAGCGCCGGATATCCCGGCGGCAG 82
BSNT_02947___ 80 AGGCACTCGTTTTGTTATCCATTCTATTTTTCGTGCCGGGAATTTTCCCT 129
||||.||..||||.|||||.||.||.|||||.||.|||| .|.|.|
BL03137 83 AGGCGCTTCTTTTATTATCAATGCTGTTTTTTGTTCCGG----CTGCGC- 127
BSNT_02947___ 130 TTTGTTTTTCG---TCAATC-------------GCCGGTTCGTGCTGCTC 163
||| |||.|| |..|.|||| ||||.||
BL03137 128 --------TCGATCTCATTCAGCATGAAAATGGGATGTTTCG-GCTGATC 168
BSNT_02947___ 164 AG--------TTTATGGAATATG-GGCTAATCCAGTGCTATCCGGCAGCC 204
|| ||..| |||| |||| |.|.||||| .|
BL03137 169 AGCGTCTGTTTTCCT----TATGCGGCT----------TGTTCGGCA-TC 203
BSNT_02947___ 205 GCATTCTTTGCGGTGTT--------GGCTCTTGTGACAGAGGTTGGAGTT 246
||..||..||| |||| .|||.||.|.| |||| |
BL03137 204 GCTATCACTGC--TGTTCCATTCCCCGCTTTTTTCA------TTGG---T 242
BSNT_02947___ 247 TTCGCACT--TATCTGGTGGATGTACACAGTTTTTATTGCATTGTATGCG 294
||.||..| |||..|| ||||| ||.||.||.||.|.|
BL03137 243 TTGGCTATGCTATACGG-GGATG------------ATCGCCTTATACGGG 279
BSNT_02947___ 295 ATCCTCCGCCTTTGGGAAACA-AAGATACATAGAA------TCGAAGAGA 337
...||.|||||.|||||.|.| ||| ||| |.||||||.
BL03137 280 GCACTTCGCCTCTGGGAGAGAGAAG-------GAAGGAGCCTTGAAGAGG 322
BSNT_02947___ 338 CAT-------CAGTTTTGTTCGGCCTTATTTA-------TTTGGCGGGAG 373
||| ||| ||||||..|||| |||||.|||.|
BL03137 323 CATCGATTGACAG-------CGGCCTGCTTTACCTTCCTTTTGGAGGGGG 365
BSNT_02947___ 374 GAGGATTTTGGTTTTTTGCTTAT--GCTGCCCATTTGCAGATCATGCAAT 421
| |||.||||||||||| |||| .||.|.|||.|||||.|.|
BL03137 366 G-------TGGCTTTTTGCTTATACGCTG--AATCTCCAGGTCATGGATT 406
BSNT_02947___ 422 TTGGCCCTCTCATCATTTTGCTTACTGCTGTCCACTTTCACTATTCTGCT 471
|..||||.||.||..|..||||.||.||.||.||.|||||.||||||||.
BL03137 407 TCAGCCCGCTGATTGTGCTGCTGACAGCGGTACATTTTCATTATTCTGCA 456
BSNT_02947___ 472 TTTCTGATCCCGATCTTCAACGGATTACTCGGCA-GAACCATTAGAAAAC 520
|||||.||.|||||.||.||.|||.|.|||||.| |||.| |..||||.
BL03137 457 TTTCTCATTCCGATTTTTAATGGAATGCTCGGAAGGAAGC--TGAAAAAG 504
BSNT_02947___ 521 ATCGG--------ATGTTGTACAGTTGGATAACATGGGTGATTTTGCTTT 562
|..|| |||..| .|.|.||||||.|.||..||||.|
BL03137 505 AAAGGCCTCCTTTATGCGG-------CGGTGACATGGCTCATCATGCTGT 547
BSNT_02947___ 563 CGCCCCTTCTTATCGCACTGGGCATCACATATTCAAAAACACTTGATGTC 612
|.||.||..|.||.||..|.|||||..|.|.|||.|||||..||||||||
BL03137 548 CTCCGCTGTTCATTGCCATCGGCATATCGTTTTCGAAAACCATTGATGTC 597
BSNT_02947___ 613 ATTGCGGTTAGC-----ATT---------TATATG---GCGGCGATTTAT 645
||.||.||| || ||| ||||.| ||||| |||.|
BL03137 598 ATCGCTGTT-GCGCTGTATTTGTCGGCCCTATACGGAAGCGGC--TTTCT 644
BSNT_02947___ 646 CTTCATGCAT---TTTTGGTGTTCA---------CGGCAGCTTTTCGCAC 683
| ||.| ||..||..|||| |||| ||||..
BL03137 645 C-----GCCTCGATTACGGCCTTCAAAAACAGCGCGGC------TCGCCG 683
BSNT_02947___ 684 CAAGACGGGGACATTTCTTATTCGGCTTTCTTCCGCTGTT---TTAATGA 730
| |||.|||| ||| |||..||.|| |||||||
BL03137 684 C------------TTTGTTAT----CTT--TTCGTCTTTTACATTAATGA 715
BSNT_02947___ 731 TAACGATTGCTTTCTCGATGATTTATTCATTTGGTGTATTT--CGGCAAG 778
|.||.||||||||.||..|.|||||.||.|..||.||.||| ||||..|
BL03137 716 TCACCATTGCTTTTTCACTCATTTACTCTTACGGCGTTTTTCGCGGCCGG 765
BSNT_02947___ 779 AAGTTACATTGACCATCAATCAGATGATTTGGATTCACGGTTTTGTCAAT 828
|.| ||.||.||.|||.|..|.|||||||||||||||||..|||||||.
BL03137 766 ACG--ACTTTTACAATCCAGGAAATGATTTGGATTCACGGGCTTGTCAAC 813
BSNT_02947___ 829 GCGTTTGGTGTTATCTTGCCCGCTCTCATAGGGTG--------------- 863
||.|||||.||.|||.|.||.||.||.|..||.||
BL03137 814 GCCTTTGGCGTCATCATTCCAGCGCTGACCGGCTGGCGCCTTGAATCCCC 863
BSNT_02947___ 864 -----------GAGAATAGAGG--ATGCGAAGCCTTTTGATGCAGACAGT 900
|.|||..|||| |.|||||.| |||| || ||
BL03137 864 TGGGCCGGGCTGTGAAAGGAGGCAAGGCGAAAC-----GATG-AG-CA-- 904
BSNT_02947___ 901 GTAAAGACATTCAGCCGTATCTACGGAAAAAGAAAGATTGGAGAAGAATT 950
||||| |||||.|...|.|||||.||||..||.||
BL03137 905 ------ACATT----------TACGGCACTTGGAAGATCGGAGCCGATTT 938
BSNT_02947___ 951 TTTA-GCTAACA-----TTCAAGCTGAAAATAACGCTCG--GTACAGCGG 992
|||| .|..||| |.|||.|.|| .||| .|||...||
BL03137 939 TTTACACAGACACCGATTACAAACCGA--------TTCGTCTTACCAAGG 980
BSNT_02947___ 993 GCTTGTGGATGATATGGGCAGCCTGCGTT------CAAAAGATTTTTCA- 1035
.||||..|||||||||.|| ||.|| ||||.|| |||||
BL03137 981 TCTTGCCGATGATATGAGC-----GCATTTCAGAGCAAAGGA--TTTCAG 1023
BSNT_02947___ 1036 CCAGAAAAACTGGCGCCGCTCATTCTTTCG--TTTTATGAACAAACCATC 1083
||.||.||..|..|.||.||.|||| ||| ||.|||||.||.||...|
BL03137 1024 CCTGAGAAGGTTTCTCCTCTTATTC--TCGATTTCTATGAGCATACTGCC 1071
BSNT_02947___ 1084 GAATACAAT--ATTAA-AGCAAAAGTAACATGGAG--CATGTGGTTTCGG 1128
||.| || .|||| |||..|..|..|.|||.| || ||||||...
BL03137 1072 GATT---ATTCGTTAACAGCGGAGATCTCCTGGCGTCCA--TGGTTTAAA 1116
BSNT_02947___ 1129 CCGCTTGCAATTATTTACGA----ATGGTTCAGCAGAAGAATCGGCCAAA 1174
|||||.||....||.|||.| || |||| ||||..|..||.||||
BL03137 1117 CCGCTCGCGCACATGTACCAGCTGAT--TTCA--AGAAAGACAGGACAAA 1162
BSNT_02947___ 1175 TACATCTTTCGACGAA-CCCTGACTGGTATAGGATGTACAGCAAGATAAA 1223
|.|||.|...|||.|| .||.||| ||.|.|.||||.||.|..||||.|.
BL03137 1163 TTCATTTGGGGACTAAGACCGGAC-GGCAAACGATGGACGGAGAGATTAT 1211
BSNT_02947___ 1224 AGGTGTTCATTCGAAAAAAGACGGAAGGGAAAGA--GTACGTGCCTGGAT 1271
.||||||.||||....|.|||||||||| |||| ||.||.||||||||
BL03137 1212 CGGTGTTGATTCAGCCAGAGACGGAAGG--AAGAATGTGCGCGCCTGGAT 1259
BSNT_02947___ 1272 TAGAACAAATGAAAAAAACGAAACCATTTTTACCGCTCTTTATTCAGTGT 1321
.|||||.||.||...|..|||.||..|.|||...||.||||||||.|...
BL03137 1260 CAGAACGAACGAGGTAGGCGAGACTGTGTTTGTGGCGCTTTATTCTGCTC 1309
BSNT_02947___ 1322 AT-----CGTTCAAATGGAGAGGGGTATATGAATATTTCTTTAC-CGCTT 1365
|| ||.|||.|| .|.| ||||||||||| | ||||.
BL03137 1310 ATACCCACGATCACAT-CACA----TATATGAATAT-------CGCGCTG 1347
BSNT_02947___ 1366 CCATT-CAG-----CAGCATGACAGGTATTTTAAAACCATATCATCATCA 1409
||||| |.| ||..||||||||.||||||||.||..| |.||
BL03137 1348 CCATTGCCGTTTTCCAATATGACAGGCATTTTAAAGCCGAA-----AGCA 1392
BSNT_02947___ 1410 GGAGAAG-----CTGGTTTTAACAAGCAGGCGGAGAAA-AAGCAGAGCG- 1452
|..||.| |||.||||.||.||||| .||.||| .|.|.||.||
BL03137 1393 GAGGACGGCTGCCTGATTTTGACGAGCAG--TGATAAACGATCTGACCGT 1440
BSNT_02947___ 1453 GGTGATGAGGGGATTTATCTGCAAACAAGAGCGGGAACTTGT------CC 1496
||.|||||.||.||.|..||....||..||.|.|||||.|.| ||
BL03137 1441 GGGGATGAAGGCATCTTCCTTTCGACCGGAACAGGAACGTTTAAACTGCC 1490
BSNT_02947___ 1497 GCT-TCCTTTATCTGAAACCTTTCTGATAGAAGCTGCACATGACAACAAA 1545
||| .|| |||..||||.|.||..||| .||| ..|||.|.|.|
BL03137 1491 GCTCGCC-------GAACGCTTTATCATTAAAG-AGCA-GGGACGAAAGA 1531
BSNT_02947___ 1546 TTAACGGCTGT-------TCATCATATGTGGCTGTTTGGAATAAAATTTC 1588
||||.| |||.|..|||||||||||.||.|||...||||
BL03137 1532 -----GGCTCTGCGCCCATCACCGCATGTGGCTGTTCGGCATACGGTTTC 1576
BSNT_02947___ 1589 TAACTGTTCATTACAGCATTACACATATTAACCAGCCTATTGAAAGAACC 1638
| |..|||| || |||| |.||||||||.|
BL03137 1577 T------------CGACATT-CA-ATAT-------CATATTGAAAAA--- 1602
BSNT_02947___ 1639 TAA------------------------------------------- 1641
||
BL03137 1603 -AAGGATTCTGCCGTGAAAAGGGCGAAAATAGCAAATGAAAGCTAG 1647
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