Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02946 and BL03136
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_02946___yndH.1.5803.seq
# -bsequence dna-align/BL03136.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02946___yndH-BL03136.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02946___yndH-BL03136.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02946___yndH
# 2: BL03136
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 705
# Identity: 393/705 (55.7%)
# Similarity: 393/705 (55.7%)
# Gaps: 159/705 (22.6%)
# Score: 912.0
#
#
#=======================================
BSNT_02946___ 1 GTGAGTTCGATTTATGAA----AAATCAATTATTAACTATCATTTGCTGC 46
.|||.||||||.|||||| ..|||.|..|| |.|||..|.||.|
BL03136 1 TTGATTTCGATGTATGAACGGGTGATCGAGGAT----TTTCACCTTCTCC 46
BSNT_02946___ 47 ATCCCAAGCTGCGGAAACGGTA---------CCAATTAGACGGGTCTCAA 87
|.||.||.||...|.|.||||| .|||..|.|||.|| ||||
BL03136 47 ACCCAAAACTCAAGGAGCGGTATCAGCTCACTCAAGAAAACGTGT-TCAA 95
BSNT_02946___ 88 ACATTCAGCGGGACGGGAACGATGTCAGAAATAAGCGGAGGCTCTTTTCT 137
| ||.|..|||..||||.|.|||||...|||.||.|| .|.||
BL03136 96 A--------GGAAAAGGAGTGATGACGGAAATTTCCGGCGGTTC-ATACT 136
BSNT_02946___ 138 -GGTTAGAATGCTGTT-AAAGCTG----GGTGTTTTTTTCAGATGCTTCT 181
|||.|||.||.|||| |||||.| || |.|||.|.||.||.|
BL03136 137 GGGTCAGACTGTTGTTCAAAGCGGGAACGG-----TCTTCCGCTGTTTTT 181
BSNT_02946___ 182 TTTCAGAAAGAGGCAAAGACATTCCATTTACAATACAAAATAGAACTTGT 231
||.|.|||||.||.|...||.||||.||.||.||..|||||...|.|.|.
BL03136 182 TTCCCGAAAGGGGGAGGAACGTTCCGTTCACGATTGAAAATCACATTCGG 231
BSNT_02946___ 232 CTTTTGAAATCACAA-CATACA--GGAA-----TAGAATGGAATCGTACA 273
||...|||| || .||||| ||.| | |||||..|.||
BL03136 232 CTGACGAAA----AATGATACACCGGCAGCCGTT----TGGAACAGGAC- 272
BSNT_02946___ 274 TTTATCTTT-----------AAAGGCAAAAAACGTTTCTTTGACGCGATA 312
|||.|.||| ||||||| |||| ||.||..|.
BL03136 273 TTTCTTTTTTCAGGATAAACAAAGGCA-------TTTC---GATGCTGTC 312
BSNT_02946___ 313 ATGATATATGACGAGAAA---------GAAA--ATAGAATACTTGATTTC 351
|||||.||| ||.||| |||| ||.||.| |||||
BL03136 313 ATGATCTAT---GATAAAAGCCGTGTTGAAATCATCGACT-----ATTTC 354
BSNT_02946___ 352 -----TTCGGCAAACCTCATCT----GCTGCTGTCTGTTTTGACGTTCGA 392
|.||.|||.|.|.|||| .||||.|| ||..|.|| ||
BL03136 355 GGGCATCCGCCAATCTTAATCTCAAGCCTGCGGT---TTAAGGCG---GA 398
BSNT_02946___ 393 GGCATCTCATGACGGCTCTCTTA-CGATCACATCGGGAAAGCAATGGC-- 439
||| .|||||||| .||| ||||.||.||.|..|..|||||||
BL03136 399 GGC------CGACGGCTC-ATTATCGATTACTTCTGTCAGACAATGGCTG 441
BSNT_02946___ 440 ----TATTGATATGCGGAAAAAGAATCCCGTTGCCGAAATGGCTGA-CCG 484
||||.| |.||||||...|||.|| |.|||..|||.| .||
BL03136 442 CCTTTATTCA-----GAAAAAAGCTGCCCCTT--CCAAAGTGCTTATACG 484
BSNT_02946___ 485 GTACATCCGTAGTTTG--CGAAACGTTTGATGAA-AAAAAGAATTGTTTC 531
|||..||| ||..|| .|||.|||.|||.||| |||||| ..|||||.
BL03136 485 GTATTTCC--AGCGTGAATGAATCGTATGACGAAGAAAAAG-GCTGTTTT 531
BSNT_02946___ 532 ACCATTGAAGTGCATGTGCAAAATACAATTCTTGGCACTCTTTTCTTTTA 581
||.|||||.||.||||||.||||..|..|..|.||.||.||.||....||
BL03136 532 ACAATTGACGTTCATGTGAAAAACCCGCTGTTCGGAACGCTGTTTGCCTA 581
BSNT_02946___ 582 TAAAGGAACGTTTCA---GGAGGAAGAGAGAGAATCATGCAACGAAATGG 628
.|.||||||||||.| ||||||.||||..|.||.|
BL03136 582 CAGAGGAACGTTTAACAGGGAGGAGGAGACGGCATGA------------- 618
BSNT_02946___ 629 CATAG 633
BL03136 618 ----- 618
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