Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03114 and BL03129

See Amino acid alignment / Visit BSNT_03114 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_03114___yozA.1.5803.seq
#    -bsequence dna-align/BL03129.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03114___yozA-BL03129.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03114___yozA-BL03129.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03114___yozA
# 2: BL03129
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 335
# Identity:     239/335 (71.3%)
# Similarity:   239/335 (71.3%)
# Gaps:          13/335 ( 3.9%)
# Score: 818.5
# 
#
#=======================================

BSNT_03114___      1 ATGACTG-----AATTTAGAGA-AACGGAACAA-----TCGGCTGCTGAT     39
                     ||||.||     |||..|||.| |||.|||.||     .|||  ||.||.
BL03129            1 ATGAGTGAGCACAATCAAGAAACAACAGAAAAACAGGTGCGG--GCCGAG     48

BSNT_03114___     40 CTGGACGAGGAGACGCTGTTTCTAGTCGCGCAAACATTCAAAGCGCTTTC     89
                     .|.||.||.||.||..|.|||||.||..|.||.||.||.||||||||.||
BL03129           49 TTAGATGAAGAAACTTTATTTCTCGTTTCACAGACGTTTAAAGCGCTCTC     98

BSNT_03114___     90 TGATCCAACCCGAATCAGGATTCTCCATTTATTGTCCCAGGGAGAACATG    139
                     |||.|||||..||||||..|||||.||..|..|.||.||.||.||.|||.
BL03129           99 TGACCCAACGAGAATCAAAATTCTTCACCTGCTCTCACAAGGCGAGCATT    148

BSNT_03114___    140 CTGTAAACGGAATTGCAGAAAAGCTGAATTTACTGCAATCCACCGTGTCC    189
                     |.||.||.|.|||.|||||.|||||||.|.|.|||||.||.|||||.||.
BL03129          149 CGGTTAATGAAATAGCAGAGAAGCTGAGTCTCCTGCAGTCAACCGTTTCT    198

BSNT_03114___    190 CACCAGCTTAGATTTTTGAAAAATCTTCGGCTTGTCAAATCGCGCAGAGA    239
                     ||||||||.||.|||||.|||||.|||||.||.||||||||..|.||.|.
BL03129          199 CACCAGCTCAGGTTTTTAAAAAACCTTCGTCTCGTCAAATCAAGAAGGGC    248

BSNT_03114___    240 AGGAACATCGATTTATTACTCTCCGGAGGATGAACATGTTTTAGATGTTC    289
                     |||.||.||.||||.|||.||||||||.||..|.|||||..|.|||||.|
BL03129          249 AGGGACTTCCATTTTTTATTCTCCGGAAGACCAGCATGTCCTCGATGTAC    298

BSNT_03114___    290 TTCAGCAAATGATCCATCATACACAGCATGATTGA    324
                     |||||||.||||||.||||||||||.|||||.|.|
BL03129          299 TTCAGCAGATGATCGATCATACACAACATGACTAA    333


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