Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03924 and BL03125

See Amino acid alignment / Visit BSNT_03924 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:56
# Commandline: needle
#    -asequence dna-align/BSNT_03924___levR.1.5803.seq
#    -bsequence dna-align/BL03125___levR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03924___levR-BL03125___levR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03924___levR-BL03125___levR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03924___levR
# 2: BL03125___levR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2838
# Identity:    2205/2838 (77.7%)
# Similarity:  2205/2838 (77.7%)
# Gaps:          81/2838 ( 2.9%)
# Score: 8510.5
# 
#
#=======================================

BSNT_03924___      1 GTGAGAAGAATAGATAAAATATACCATCAGCTCAAGCATAATTTTCATGA     50
                     .|||.|||||||||||||||.|||||||||||...|.|||||||||..||
BL03125___lev      1 ATGAAAAGAATAGATAAAATCTACCATCAGCTGCTGGATAATTTTCGCGA     50

BSNT_03924___     51 -------TTCAACCTTAGATCATCTTTTAAAAATACAAGGGAATTCAGCA     93
                            .|||       ||||.||||||||.||||||||||||||.||.
BL03125___lev     51 AAAGAATATCA-------ATCAGCTTTTAAAGATACAAGGGAATTCGGCT     93

BSNT_03924___     94 AAGGAGATTGCCGAGCAGCTGAAAATGGAGCGGTCCAATGTCAGCTTTGA    143
                     ||.||.||.||||.|||||||.||||||||||.|||||||||||||||||
BL03125___lev     94 AAAGAAATCGCCGGGCAGCTGCAAATGGAGCGTTCCAATGTCAGCTTTGA    143

BSNT_03924___    144 ATTGAACAATCTCGTCCGGTCCAAAAAGGTCATCAAAATTAAAACGTTTC    193
                     |||.|||||||||||.|||.||||||||||.|||||.|||||||||||.|
BL03125___lev    144 ATTAAACAATCTCGTTCGGGCCAAAAAGGTGATCAAGATTAAAACGTTCC    193

BSNT_03924___    194 CTGTAAGATACATCCCAGTCGAGATAGCAGAAAAATTATTCAACAAGAAA    243
                     |.||..|.||||||||.||.||.||.|..|||||..|.||.||||..|||
BL03125___lev    194 CCGTCCGCTACATCCCGGTGGAAATTGTTGAAAACGTCTTGAACATCAAA    243

BSNT_03924___    244 TGGGATACAGAGATGATGGAAGTGAAAGACCTTCAGGCGTTTTCCGGAAA    293
                     |||.||.|||||.|||||||.||..||||.| |.|||||..|..|.||..
BL03125___lev    244 TGGAATTCAGAGTTGATGGAGGTTGAAGAAC-TGAGGCGGCTGGCTGACG    292

BSNT_03924___    294 TTCAAAGCAAAATC---------ATCAACACATTTCCACGAATCCCCTAG    334
                     ..||||  ||||.|         ||      ||.|||.|..|||||||.|
BL03125___lev    293 GCCAAA--AAAAGCCGGCGCGCAAT------ATATCCGCCGATCCCCTCG    334

BSNT_03924___    335 AGCTTATGATAGGGGCAAAAGGGAGTTTGAAGAAAGCGATCTCCCAGGCA    384
                     ||||.|||||.|||||.||||||||.|||||.||.||.||.||.|||||.
BL03125___lev    335 AGCTCATGATCGGGGCTAAAGGGAGCTTGAAAAAGGCAATTTCTCAGGCG    384

BSNT_03924___    385 AAAGCAGCTGTCTTTTATCCGCCGACCGGTCTGCATATGCTCCTCCTAGG    434
                     |||||.||.|||||||||||.|||..|||..||||||||||.||.||.||
BL03125___lev    385 AAAGCGGCAGTCTTTTATCCTCCGCACGGCTTGCATATGCTGCTGCTCGG    434

BSNT_03924___    435 GCCGACTGGTTCCGGTAAATCCCTTTTTGCGAACCGAATTTACCAGTTTG    484
                     ||||||.|||||.||.|||||.||.||||||||.||.||.||||||||.|
BL03125___lev    435 GCCGACGGGTTCGGGGAAATCGCTGTTTGCGAATCGGATCTACCAGTTCG    484

BSNT_03924___    485 CCATTTACTCTGACATATTGAAGGCCGGCGCACCATTTATTACATTTAAC    534
                     ||.||||.|||||||||||||||.|||...|.||.||.||.|||||.|||
BL03125___lev    485 CCGTTTATTCTGACATATTGAAGCCCGATTCCCCGTTCATCACATTCAAC    534

BSNT_03924___    535 TGTGCAGACTACTACAACAATCCTCAATTATTGCTTTCTCAATTATTCGG    584
                     ||||||||.|||||.|||||.||||||||||||||.||||||||.|||||
BL03125___lev    535 TGTGCAGATTACTATAACAACCCTCAATTATTGCTCTCTCAATTGTTCGG    584

BSNT_03924___    585 ACACAAAAAAGGTTCATTTACAGGTGCTGCCGAGGATAAGGCGGGTTTAG    634
                     |||.||||||||.||.|||||||||||.|..||.||.||.||.||.||||
BL03125___lev    585 ACATAAAAAAGGGTCTTTTACAGGTGCGGGTGAAGACAAAGCAGGATTAG    634

BSNT_03924___    635 TCGAACAGGCCAATGGGGGCATTCTTTTTATGGATGAAATCCACCGTCTC    684
                     ||||.|||||..|.|||||||||||.|||||||||||||||||.||.|||
BL03125___lev    635 TCGAGCAGGCGGACGGGGGCATTCTGTTTATGGATGAAATCCATCGCCTC    684

BSNT_03924___    685 CCTCCCGAGGGACAAGAAATGCTGTTTTATTTTATTGACAGCGGTTCTTA    734
                     ||.||.|||||.||.|||||||||||||||||.||.||||||||..|.||
BL03125___lev    685 CCGCCGGAGGGGCAGGAAATGCTGTTTTATTTCATAGACAGCGGCACATA    734

BSNT_03924___    735 TAACAGGCTTGGAGAATCTGAACATAAACGAACATCGAACGTATTGTTTA    784
                     .|||||||||||.|||.|.||.|||||||||||..|.||.||..||||||
BL03125___lev    735 CAACAGGCTTGGTGAAACAGAGCATAAACGAACGGCAAAAGTCCTGTTTA    784

BSNT_03924___    785 TTTGTGCGACTACAGAAAATCCGAGTTCTGCACTATTGAAAACGTTTTTG    834
                     |.||||||||.||||||||||||||.||||||.|..||||.||.||||||
BL03125___lev    785 TCTGTGCGACAACAGAAAATCCGAGCTCTGCATTGCTGAAGACATTTTTG    834

BSNT_03924___    835 CGAAGAATCCCAATGACCATACATATTCCTTCGCTTGAAGAACGATCACT    884
                     ||.|||||.||.||||||.|||||||.||||||||..|.|||||.||.||
BL03125___lev    835 CGGAGAATTCCGATGACCGTACATATCCCTTCGCTCAATGAACGGTCCCT    884

BSNT_03924___    885 TAAAGAAAGAGTGGATCTGACGACGTTTTTATTAGGGAAAGAAGCAGAGC    934
                     |..||||||||||||.|||||.|||||||||||.||||||||||||||||
BL03125___lev    885 TGGAGAAAGAGTGGAGCTGACAACGTTTTTATTGGGGAAAGAAGCAGAGC    934

BSNT_03924___    935 GAATTAAGAAGAATCTGAGTGTGCATATCGATGTCTATAATGCGCTTATT    984
                     |.||.||.||.||..|.|.||||||.|||||||||||||||||.||.|||
BL03125___lev    935 GGATCAAAAAAAACTTAAATGTGCACATCGATGTCTATAATGCACTGATT    984

BSNT_03924___    985 CACTCTGCGAAATTTGGGAATGTCGGACAGCTGAAATCAAATGTCCAGTT   1034
                     ||.|||||.|||||.||.||||||||.|||||||||||||||||.|||.|
BL03125___lev    985 CATTCTGCAAAATTCGGAAATGTCGGGCAGCTGAAATCAAATGTACAGCT   1034

BSNT_03924___   1035 AGTTTGCGCACACGGATTTTTGCATAACCTTGACAGAAATGAAGTTATTG   1084
                     .||.||.||.|||||.|||||..||||||||||||.|.|.||.|||.|||
BL03125___lev   1035 GGTCTGTGCGCACGGGTTTTTAAATAACCTTGACAAAGACGAGGTTGTTG   1084

BSNT_03924___   1085 AACTGACTGTTCGCGATCTGCCTGATGAAATCAAGCAAGAATGGATGTCC   1134
                     |||||||.||.||.|||||.||.||.||.|||||..|.||.|||||||||
BL03125___lev   1085 AACTGACCGTCCGGGATCTTCCGGACGAGATCAAAGAGGACTGGATGTCC   1134

BSNT_03924___   1135 AGCAGCAAAAACATGCAAAGAAGCAAAGCCATTTCTGAATATGTCAATAT   1184
                     |||||||||||.||..||.|.||||||...|||||||||||||||||.||
BL03125___lev   1135 AGCAGCAAAAATATTGAACGGAGCAAAATGATTTCTGAATATGTCAACAT   1184

BSNT_03924___   1185 TACAACGATTATCTCTCCGATTGTAGAAGATGAAACAACAAAAATTGACG   1234
                     |||||||||.||||||||||||||.|||||||||.||||.|||||.||.|
BL03125___lev   1185 TACAACGATCATCTCTCCGATTGTGGAAGATGAAGCAACGAAAATCGATG   1234

BSNT_03924___   1235 AAGACCTCTCATTTAACTTATATCATTTGATTGAGGAAAAAGTGAAAACG   1284
                     |      |||.||||||||.||||||.|.||.||.|||||||.|||||..
BL03125___lev   1235 A------CTCCTTTAACTTGTATCATGTCATAGAAGAAAAAGCGAAAATC   1278

BSNT_03924___   1285 CTTATGAAAGAAGGTTTATCCAAAAAGGATATTAACCAGTACATCTTGAC   1334
                     ||.|..||||||||.|||.|.||||||.|.||.||.||.||.||.||.||
BL03125___lev   1279 CTCAATAAAGAAGGCTTAACAAAAAAGCAAATCAATCAATATATATTAAC   1328

BSNT_03924___   1335 TGATGTCCATTTGCATGTCAGAAGTTTTTTTCATCATCAA--GCTTTTCA   1382
                     .|||.|.||||||||.||||||||.||||||.||||..||  ||  ||||
BL03125___lev   1329 GGATATTCATTTGCACGTCAGAAGCTTTTTTAATCAGAAAATGC--TTCA   1376

BSNT_03924___   1383 AAAAGACAACCTGCTGACATTCGTTGAAGATGATGTGATTCAAATGACAA   1432
                     |||..|||...|.||.|.||||||||||||.||.||||||||.|||||.|
BL03125___lev   1377 AAACCACAGTTTACTCAAATTCGTTGAAGACGACGTGATTCAGATGACGA   1426

BSNT_03924___   1433 AACAGTTAAAAGAAATAGCTGAACATGAGCTGGATTGCACATTTGACCGT   1482
                     ||.|.|||||.|.|.|.||.|||||||||||.||.||||..||.||||||
BL03125___lev   1427 AAGAATTAAAGGGAGTCGCCGAACATGAGCTTGACTGCAAGTTCGACCGT   1476

BSNT_03924___   1483 AAGTTTATTTATTTCTTGAGTATGCATATTGACGCATTTTTAAAGCGAGG   1532
                     ||.||.||.||||||.||||.|||||.||.|.|||||||||||||||.||
BL03125___lev   1477 AAATTCATCTATTTCCTGAGCATGCACATCGCCGCATTTTTAAAGCGCGG   1526

BSNT_03924___   1533 AAAGCAAATTGATGTTTTGAATACACAGGAGACAGATGAAATTCGTGATA   1582
                     ||||||.||||||||.||.|||.|.|||||.|||||||||||..|.||.|
BL03125___lev   1527 AAAGCAGATTGATGTCTTAAATTCGCAGGAAACAGATGAAATCAGGGAAA   1576

BSNT_03924___   1583 CCCATGTGAAAGAATATCG-GGTGGCGATGATTTTTAAAGATAAAATTCA   1631
                     |||||||||||||||| || |||.||..|.|||||.||||||||||||||
BL03125___lev   1577 CCCATGTGAAAGAATA-CGAGGTCGCACTCATTTTCAAAGATAAAATTCA   1625

BSNT_03924___   1632 GGAATATTTTAAAGTGGCTATTCCTGAAATAGAAGTCATCTACTTAACGA   1681
                     .|.||||||.|||||..|..||||.|||||.||||||||||||||.||||
BL03125___lev   1626 AGCATATTTCAAAGTAACCGTTCCGGAAATCGAAGTCATCTACTTGACGA   1675

BSNT_03924___   1682 TGTTAATTCATTCCATCAAATCGTTAAAGGAGAACAAAAGAGTC-GGTAT   1730
                     ||.|.|||||.||.||.|||||.|..||.||.|||||||| |.| ||.||
BL03125___lev   1676 TGCTCATTCAGTCGATTAAATCATGGAAAGAAAACAAAAG-GACGGGCAT   1724

BSNT_03924___   1731 TATCGTGGCTGCTCATGGAAACAGCACGGCGAGTTCAATGGTTGAAGTCG   1780
                     |.|||||||.||.|||||||||||||||||.||.||.|||||||||||.|
BL03125___lev   1725 TGTCGTGGCCGCCCATGGAAACAGCACGGCAAGCTCTATGGTTGAAGTAG   1774

BSNT_03924___   1781 CGACAGAACTGCTGGGGAGTACGCCGATTGCAGCAGTTGACATGCCGCTT   1830
                     |.||.|||||||||||.||.||.|||||.||.||.|||||.|||||..|.
BL03125___lev   1775 CCACTGAACTGCTGGGAAGCACCCCGATCGCTGCGGTTGATATGCCTTTG   1824

BSNT_03924___   1831 ACTGTTTCACCTTCGGACATTCTTGA-ATGCGTAGCAGAAAAAATGAAAC   1879
                     ||.||||||||.||||| |.||.|.| .|||.||||.||.|||.||||.|
BL03125___lev   1825 ACCGTTTCACCCTCGGA-AATCGTCAGCTGCCTAGCGGAGAAAGTGAAGC   1873

BSNT_03924___   1880 AGGTTGATGAAGGCGAAGGTGTTTTAATGCTGGTAGATATGGGGTCGCTT   1929
                     |||||||||||||.|||||.|||||||||||.||.||.|||||.||||||
BL03125___lev   1874 AGGTTGATGAAGGAGAAGGCGTTTTAATGCTTGTCGACATGGGATCGCTT   1923

BSNT_03924___   1930 GCAATGCTGGAAAGCAGGCTGGAGGAAAAGACAGGCATCTCTATTAAAAC   1979
                     ||.|||||||||||||||||.||..||.|.||.|||.|....||.|||||
BL03125___lev   1924 GCGATGCTGGAAAGCAGGCTTGAACAACAAACGGGCGTTAAAATAAAAAC   1973

BSNT_03924___   1980 GATCAGCAATGTTACGACTTCAATGGTGCTGGATGCTGTCAGAAAGGTCA   2029
                     ||||||||||||||||||.||.||||||||.|||||.|||.|.|||||.|
BL03125___lev   1974 GATCAGCAATGTTACGACATCTATGGTGCTCGATGCCGTCCGCAAGGTGA   2023

BSNT_03924___   2030 ACTATTTGAATTTAAATTTGCATGCGATCTATCAATCGGTCACGAAGGAT   2079
                     |.|||||||||||.||||||||.||.|||||..|.|||||.||.||||||
BL03125___lev   2024 ATTATTTGAATTTGAATTTGCACGCCATCTACGATTCGGTTACAAAGGAT   2073

BSNT_03924___   2080 TTTATCGAGTTGTGGGAGCG-TCAGCCAGCGGCAC-CCGGCAAAAAGAAG   2127
                     ||.|||||.||.|||| .|| |.|.|| ||||..| |.||||||||||||
BL03125___lev   2074 TTCATCGATTTATGGG-CCGATAAACC-GCGGGTCTCAGGCAAAAAGAAG   2121

BSNT_03924___   2128 GCATTGGTATCCATCTGCACCACGGGGAGCGGGACGGCCAAAAAGCTGGA   2177
                     ||..|.||.|||||.|||||.||.||..||||.|||||.||.|||||.||
BL03125___lev   2122 GCGATCGTCTCCATTTGCACAACAGGCGGCGGAACGGCGAAGAAGCTCGA   2171

BSNT_03924___   2178 AGACATTCTAACCACGATCGTAAACAAGGCCTCCGAT--ACACCGATTCA   2225
                     |||.|||.||||..|.|||||.|.||.|.|.||.|||  |||   |.|||
BL03125___lev   2172 AGAGATTTTAACATCAATCGTGAGCAGGACATCTGATGAACA---AATCA   2218

BSNT_03924___   2226 -CATATTGACCGTATCATCGATTAAGCTGGCCAACAGCATAAAAGAAATC   2274
                      |||.|||||.||..|||||||.||..|.||.|.|.||||.||||||||.
BL03125___lev   2219 GCATTTTGACGGTGCCATCGATCAAATTAGCAAGCCGCATCAAAGAAATT   2268

BSNT_03924___   2275 GAAAAAGAGTATGAAATCCTTGCGACAGTCGGAACGAAAGACCCTAAAAT   2324
                     |||||||.||||||.||.|||||.||.||.||.|||||..||||||||||
BL03125___lev   2269 GAAAAAGCGTATGAGATTCTTGCCACGGTTGGCACGAAGAACCCTAAAAT   2318

BSNT_03924___   2325 CAATGCTCCGCATGTATCTTTAGAAGTGTTAATTGAAGGGGAGGGAGAGA   2374
                     |.||||||||||.||..||||||||||.||.||||||||.||.||.||.|
BL03125___lev   2319 CGATGCTCCGCACGTCCCTTTAGAAGTATTGATTGAAGGCGAAGGGGAAA   2368

BSNT_03924___   2375 AGCTGATTCAACAGGCGATTACAAAAGGAAGCATCCCCTTGAGCAATGGA   2424
                     |..|||||||.||||.||||.|||..||....|||||..|||||...|||
BL03125___lev   2369 AAGTGATTCAGCAGGTGATTGCAACCGGCGATATCCCGATGAGCGGCGGA   2418

BSNT_03924___   2425 TTGAACGAAGCAAATATGATTGTCAGGGAGCTTTGCGAGGATAGCCTGAA   2474
                     ||...||..|.||||.||.||||.|.||||||||||||.||.||||||||
BL03125___lev   2419 TTATCCGGTGAAAATGTGGTTGTAAAGGAGCTTTGCGAAGACAGCCTGAA   2468

BSNT_03924___   2475 AAAATACCTTGTCTTCTTGAATCCCCATCATGTGATCGAAATGTTATTGG   2524
                     .||.||.||||||||.|||||||||.||||||||||.||.|||.|.||||
BL03125___lev   2469 GAAGTATCTTGTCTTTTTGAATCCCTATCATGTGATAGACATGCTGTTGG   2518

BSNT_03924___   2525 AGTGGCTGCAAACCGTTCAAGATGAGCTGGGGGTCATTTTCAATAATGCG   2574
                     |||||||.||.||.||||||||.||.|||.|..|.|..||||..||.||.
BL03125___lev   2519 AGTGGCTTCAGACGGTTCAAGACGAACTGCGTATGACATTCAGCAACGCT   2568

BSNT_03924___   2575 GTTTTGATCAAAGTCATTATGCACACGGCTTTCGCCTTTGAAAGGGTAAT   2624
                     ||..|||||||||||||.|||||.||.|||||.||.|||||||||||.||
BL03125___lev   2569 GTGCTGATCAAAGTCATCATGCATACCGCTTTTGCTTTTGAAAGGGTGAT   2618

BSNT_03924___   2625 TAAGCAAAATCCGATCGCTTTCTCAGAGGAAGAAGAGATCAATGATCAGC   2674
                     .||.||.||.|||||||||||..|.|||||.||||||||.||||||||||
BL03125___lev   2619 CAAACAGAACCCGATCGCTTTTCCGGAGGAGGAAGAGATGAATGATCAGC   2668

BSNT_03924___   2675 -TGAAGGAAATGGTGT--ACGTGACAGAGCGAACATTAGCCCCTTATGAA   2721
                      |||   |||.|.|.|  ||.|.||||||..|||||||...|||||.|||
BL03125___lev   2669 TTGA---AAACGTTCTTCACATCACAGAGAAAACATTAAAGCCTTACGAA   2715

BSNT_03924___   2722 GAAAAGCTCGGACTTCGC-ATAAGTGATGATGAAAAATTATTTATAGCCG   2770
                     ||||||||.||.||| || ||.||.||.|||||||||.|.|||||.||..
BL03125___lev   2716 GAAAAGCTTGGTCTT-GCGATCAGCGAAGATGAAAAAATGTTTATCGCGT   2764

BSNT_03924___   2771 CCATATTTGCTGAAGAAGTGCATGGCCAGCTGTTTTAA   2808
                     ||||.|||||||||||               |||.||.
BL03125___lev   2765 CCATCTTTGCTGAAGA---------------GTTATAG   2787


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