Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03918 and BL03120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_03918___sacC.1.5803.seq
# -bsequence dna-align/BL03120___sacC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03918___sacC-BL03120___sacC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03918___sacC-BL03120___sacC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03918___sacC
# 2: BL03120___sacC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2110
# Identity: 1550/2110 (73.5%)
# Similarity: 1550/2110 (73.5%)
# Gaps: 128/2110 ( 6.1%)
# Score: 5670.0
#
#
#=======================================
BSNT_03918___ 1 ATGAAGAGAGGAGCGAAGGAACAAATGAAAAAGAGACTTATTCAAGTCAT 50
||||||||||||.|.|||||..|...
BL03120___sac 1 ------------------------ATGAAAAAGAGAATGATTCAGATGGG 26
BSNT_03918___ 51 GATCAT--GTTCACCCTGCTGTTGACTATG------------GCATTTTC 86
|||||| | |.||||| ||.|||||
BL03120___sac 27 GATCATAGG--------------GGCTATGATGTTCCCGGAAGCCTTTTC 62
BSNT_03918___ 87 GGCAGATGCAGCCGATTCAAGCTACTATGATGAGGATTACCGTCCTCAA- 135
.||||.|||.|||||..|...|||||||.|.||||||.|.||.|| |||
BL03120___sac 63 CGCAGCTGCTGCCGACCCGGACTACTATAACGAGGATCATCGGCC-CAAG 111
BSNT_03918___ 136 TACCACTTCACACCAGAGGCAAACTGGATGAATGACCCAAACGGAATGGT 185
||.||.|||||.||.||.||||||||||||||||||||.|||||.|||||
BL03120___sac 112 TATCATTTCACGCCGGAAGCAAACTGGATGAATGACCCGAACGGGATGGT 161
BSNT_03918___ 186 ATATTATGCCGGGGAATATCACTTGTTCTATCAATACCATCCATACGGGC 235
.|||||.||.|||||||||||..||||.||||||||.|||||||| .|||
BL03120___sac 162 GTATTACGCGGGGGAATATCATCTGTTTTATCAATATCATCCATA-TGGC 210
BSNT_03918___ 236 TT-CAGTGGGGGCCCATGCATTGGGGGCATGCCGTCAGCAAAGATTTGGT 284
|| |..||||||||.||||||||||||||.||.||.|||||||||||.||
BL03120___sac 211 TTGCGCTGGGGGCCAATGCATTGGGGGCACGCGGTAAGCAAAGATTTAGT 260
BSNT_03918___ 285 TACATGGGAACACCTTCCTGTTGCGCTGTATCCGGATGAAAAAGGCACGA 334
.|..|||||.||..|.||.||.||.||||||||||||||||||||.||||
BL03120___sac 261 CAAGTGGGAGCATTTGCCGGTCGCACTGTATCCGGATGAAAAAGGAACGA 310
BSNT_03918___ 335 TCTTTTCTGGAAGCGCAGTTGTAGATAAAAATAACACAAGCGGTTTTCAA 384
|.|||||.||.|||||.||.|..|||....||||.||.|..||.||||||
BL03120___sac 311 TTTTTTCGGGCAGCGCTGTCGCCGATCGGCATAATACTACAGGGTTTCAA 360
BSNT_03918___ 385 ACAGGCAAAGAGAAGCCGCTTGTGGCCATTTATACACAGGATCAGGA-AG 433
|||||.|..|||||||||||.||.|||||||||||.||||| |.||| .|
BL03120___sac 361 ACAGGGACGGAGAAGCCGCTCGTTGCCATTTATACGCAGGA-CCGGAGCG 409
BSNT_03918___ 434 GCCATCAAGTGCAAAGTATTGCCTATAGCAACGACAAAGGAAGAACATGG 483
|..|.|||||||||||.||.|||||.|||||.||||||||.||.||||||
BL03120___sac 410 GGGAACAAGTGCAAAGCATCGCCTACAGCAATGACAAAGGCAGGACATGG 459
BSNT_03918___ 484 ACGAAATACGCTGGCAACCCTGTCATTCCAAACCCGGGTAAAAAAGATTT 533
|||||.|||.|.||||||||||||||||||||.|||||.||||.||||||
BL03120___sac 460 ACGAAGTACTCAGGCAACCCTGTCATTCCAAATCCGGGAAAAAGAGATTT 509
BSNT_03918___ 534 TCGCGATCCAAAAGTCTTTTGGTATGAAAAAGA-AAAAAAGTGGGTGATG 582
.||||||||.||||||.|||||.||| ||.||| ||||||||||||||||
BL03120___sac 510 CCGCGATCCGAAAGTCATTTGGCATG-AACAGACAAAAAAGTGGGTGATG 558
BSNT_03918___ 583 GTGCTTGCGGCCGGTGACCGTATCCTCATTTATACATCAAAAAATCTGAA 632
.|||||||||..||.||.||.||.||.||.||||||||.....|..||||
BL03120___sac 559 TTGCTTGCGGGGGGCGATCGAATTCTGATCTATACATCGCCTGACTTGAA 608
BSNT_03918___ 633 GCAGTGGACGTATGCAAGTGAATTTGGTC--AGGATCAAGGAAGCCACGG 680
||.||||||.|||||.||.|||||.|| | |||| .|.||.|||||.||
BL03120___sac 609 GCGGTGGACATATGCGAGCGAATTCGG-CGAAGGA-GAGGGCAGCCATGG 656
BSNT_03918___ 681 AGGAGTATGGGAATGCCCGGATTTATTTGAGCTTCCGGTAGACGGCAATC 730
|||.||.||||||||.||||||.|.|||||||||||.|||||.||||..|
BL03120___sac 657 AGGCGTGTGGGAATGTCCGGATCTGTTTGAGCTTCCTGTAGAGGGCAGGC 706
BSNT_03918___ 731 CGAATCAAAAGAAATGGGTCATGCAGGTCAGTGTCGGAAACGGAGCGGTC 780
|||||.|||.|||||||||.|||||.||||||||.|||.||||.||.|||
BL03120___sac 707 CGAATGAAACGAAATGGGTGATGCAAGTCAGTGTTGGAGACGGTGCTGTC 756
BSNT_03918___ 781 TCGGGAGGATCAGGCATGCAATATTTTGTAGGGGACTTTGATGGAACTCA 830
||.|||||||||||||||||||||||.||.||....|||||.|||||...
BL03120___sac 757 TCAGGAGGATCAGGCATGCAATATTTCGTCGGCAGTTTTGACGGAACAAC 806
BSNT_03918___ 831 TTTTAAAAATGAAAACCCGTCAGACAAA----GTTCTCTGGACGGATTAC 876
.||||||||||||||||| |.|.|| ||.||.|||||.||||||
BL03120___sac 807 CTTTAAAAATGAAAACCC----GCCGAATCGCGTACTATGGACAGATTAC 852
BSNT_03918___ 877 GGCAGAGACTTTTATGCGGCTGTATCCTGGTCCGATATTCCATCAA--CA 924
||||.||||||.||.||.|||||...||||||.|||||.|| .|| ||
BL03120___sac 853 GGCAAAGACTTCTACGCAGCTGTCAGCTGGTCTGATATCCC--GAAGTCA 900
BSNT_03918___ 925 GACAGCCGCCGGCTATGGTTAGGGTGGATGAGCAATTGGCAATATGCGAA 974
|||.|.||..||||.|||||||||||||||||||||||||||||.||.||
BL03120___sac 901 GACGGACGAAGGCTTTGGTTAGGGTGGATGAGCAATTGGCAATACGCAAA 950
BSNT_03918___ 975 TGATGTTCCGACATCCCCATGGAGAAGTGCAACGTCCATTCCAAGAGAGT 1024
.||||||||.||.|||||.||||||||.||||.|||.||.||.|||||..
BL03120___sac 951 CGATGTTCCCACTTCCCCGTGGAGAAGCGCAATGTCGATCCCGAGAGAAG 1000
BSNT_03918___ 1025 TAAAATTGAAAGCGTTTACCGAAGGGGTTAGAGTGGTCCAAACACCAGTG 1074
|||||||||||||||||.||||||||.|||||.||.|.|||.|.||.||.
BL03120___sac 1001 TAAAATTGAAAGCGTTTTCCGAAGGGCTTAGAATGATTCAAGCTCCGGTA 1050
BSNT_03918___ 1075 AAAGAGCTGGAAACCATTCGCGGGA-CCTCTAAGAAGTGGAAGAATCTGA 1123
...||||||.|..|.||.|| |||| |.||..|.|.||||||.||...||
BL03120___sac 1051 GCGGAGCTGCAGTCGATACG-GGGAGCATCGCAAACGTGGAAAAACAAGA 1099
BSNT_03918___ 1124 CCATATCGCCT-GCAAGTCATAATGTGTTAGCAGGGCAATCTGGAGATGC 1172
.|||.|||||| |.||...| |||.||.|...|||||..||.||.|||||
BL03120___sac 1100 TCATTTCGCCTCGAAACGGA-AATTTGCTGAAAGGGCTGTCAGGCGATGC 1148
BSNT_03918___ 1173 CTATGAAATAAATGCAGAATTTAAAGTAAGCCCTGGTTCAGCTGCTGAAT 1222
.||||||||.|||||.||||||.||||||...|.||..|.||.||.||||
BL03120___sac 1149 TTATGAAATCAATGCGGAATTTCAAGTAAATACCGGAGCTGCGGCCGAAT 1198
BSNT_03918___ 1223 TTGGTTTTAAGGTCCGAACAGGTGAAAATCAATTTACGAAGGTCGGCTAT 1272
|.||.|||||.|||||||||||.|||||..|.|.||||||..|||||||.
BL03120___sac 1199 TCGGCTTTAAAGTCCGAACAGGGGAAAACGAGTATACGAAAATCGGCTAC 1248
BSNT_03918___ 1273 GACCGAAGGAACGCCAAATTGTTCGTTGACCGGAGCGAGTCGGGCAACAA 1322
..|..||..|.|||...|.|||||||.|||||||||.|.||.||.|||..
BL03120___sac 1249 AGCAAAAACAGCGCTTCACTGTTCGTCGACCGGAGCCAATCAGGAAACGT 1298
BSNT_03918___ 1323 CACCTTTAATCCGGCCTTTAACACCGGAAAAGAAACAGCCCCATTGAAGC 1372
|.|||||||||||..|||||||||.|||||..|..|.|||||..||.|.|
BL03120___sac 1299 CTCCTTTAATCCGAACTTTAACACTGGAAAGCATGCGGCCCCGCTGGAAC 1348
BSNT_03918___ 1373 CGGTAAATGGGAAGGTTAAGATGCGCATTTTTGTTGACCGCTCTTCGGTT 1422
||||...|||||||||.|||||||||||||.|||.|||||||||||.||.
BL03120___sac 1349 CGGTCGCTGGGAAGGTGAAGATGCGCATTTATGTCGACCGCTCTTCAGTC 1398
BSNT_03918___ 1423 GAAGTATTTGGGAATGACGGAAAGCAGGTCATAACGGATATTATTCTCCC 1472
||||||||.||.||.|||||.|.||||||.||.||.||.||||||.|.||
BL03120___sac 1399 GAAGTATTCGGCAACGACGGGAGGCAGGTGATCACCGACATTATTTTGCC 1448
BSNT_03918___ 1473 AGACCGATCAAGCAAAGGGCTTGAATTATATGCTGCAAATGGCGGTGTAA 1522
.||||.|||.|||||||||||.|||.||||.||..||||.||...|||.|
BL03120___sac 1449 GGACCAATCCAGCAAAGGGCTAGAAGTATACGCATCAAACGGGTTTGTCA 1498
BSNT_03918___ 1523 AGGTAAAATCTTTAACGATACACCCTTTGAAAAAGGTATGGGGAACGTCA 1572
||.|.||.||..|.|||.|.||.|||.|||||||.|||||||||.||||.
BL03120___sac 1499 AGCTGAATTCCATGACGGTTCATCCTCTGAAAAAAGTATGGGGAGCGTCG 1548
BSNT_03918___ 1573 CCTTTTATGTCCAATTTGACCGGCTGGACGACTGTAAATGGCACGTGGGC 1622
||.|||...||.||||||||||||||||||||.|||||.||....|||||
BL03120___sac 1549 CCCTTTCAATCAAATTTGACCGGCTGGACGACCGTAAACGGTGTATGGGC 1598
BSNT_03918___ 1623 CGACACAATTGAGGGGAAACAAGGGAGGTCGGACGGAGATTCCTTTATCT 1672
|||.||.|||||.||.|||||||||.|.||.||.||||||||.||.||.|
BL03120___sac 1599 CGATACGATTGATGGAAAACAAGGGCGCTCTGAAGGAGATTCGTTCATTT 1648
BSNT_03918___ 1673 TGTCTTCAGCATCCGGGTCAGACTTCACTTATGAATCTGATATCACCATT 1722
|.|||||||||...|...||||.|||||.||||||.|.|||.||.|.||.
BL03120___sac 1649 TATCTTCAGCAAAAGCAACAGATTTCACATATGAAGCAGATGTCGCGATA 1698
BSNT_03918___ 1723 AAGGATGGAAACGGAAGAGGGGCAGGAGCACTAATGTTTCGCTCTGACAA 1772
|||||||||||.||||||||||||||.||.||..|||||||..|.||..|
BL03120___sac 1699 AAGGATGGAAATGGAAGAGGGGCAGGGGCTCTCGTGTTTCGGGCCGATCA 1748
BSNT_03918___ 1773 AGATGCCAAAAACGGTTACCTTGCCAATGTGGATGCGAAGCATGACCTAG 1822
.||||..||||||||.||||||||||||||||||||.|||||||||.|.|
BL03120___sac 1749 GGATGTTAAAAACGGATACCTTGCCAATGTGGATGCCAAGCATGACGTGG 1798
BSNT_03918___ 1823 TGAAATTCTTTAAATTTGAGAACGGTGCTGCTTCTGTCATTGCTGAATAC 1872
||||.||.||.||||||||..||||..|.||.|||||.|||||.|||.||
BL03120___sac 1799 TGAAGTTTTTCAAATTTGAAGACGGCTCGGCCTCTGTTATTGCCGAACAC 1848
BSNT_03918___ 1873 AAAACACCGATAGACGTTAATAAA--------AAGTATCATCTGAAAACA 1914
...|||||||||| ||| ||.|||||.||||||||.
BL03120___sac 1849 CGCACACCGATAG--------AAACCGGCCGGAAATATCACCTGAAAACG 1890
BSNT_03918___ 1915 GAGG-CCGAGG-GCGATCGCTTTAAAATCTATTTA----GATGATCATCT 1958
|.|| |||.|| ||.| .|||| |.|||||| ||||||||..|
BL03120___sac 1891 GTGGCCCGCGGTGCAA--ACTTT----TATATTTACCTTGATGATCAATT 1934
BSNT_03918___ 1959 TGTGATTGATGCACATGATTCCGCATTTTCAGAAG--GCCAATTTGGCTT 2006
.|||||....||.|..|||||..|.|||.|.||.| ||| ||.||.||
BL03120___sac 1935 GGTGATAAGCGCCCGGGATTCAACGTTTGCCGATGGAGCC--TTCGGTTT 1982
BSNT_03918___ 2007 GAATGTGTGGGACGCGACTGCTGTCTTTCAGAATGT--------AACGAA 2048
|||||..|||||.|||||.||.|||||.||..|||| |||||.
BL03120___sac 1983 GAATGCATGGGATGCGACCGCAGTCTTCCAACATGTTTATGCCAAACGAT 2032
BSNT_03918___ 2049 GGAGTCTTAA 2058
|.
BL03120___sac 2033 GA-------- 2034
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