Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01336 and BL03116
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_01336___yfjQ.1.5803.seq
# -bsequence dna-align/BL03116___corA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01336___yfjQ-BL03116___corA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01336___yfjQ-BL03116___corA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01336___yfjQ
# 2: BL03116___corA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity: 677/1039 (65.2%)
# Similarity: 677/1039 (65.2%)
# Gaps: 158/1039 (15.2%)
# Score: 2157.5
#
#
#=======================================
BSNT_01336___ 1 ATGA-TCAACATT-------------------ACCGC---AATC--ACAA 25
|||| |.|||||| ||.|| .||| ||||
BL03116___cor 1 ATGATTAAACATTTTGCGATGACAAAGGACGGACGGCTTTTATCCGACAA 50
BSNT_01336___ 26 CAGAGCATCA--GCTGCTGAAAAATATACCGATCGAACGAGTGGAACAGC 73
||.||||..| |||| ||.||||.|
BL03116___cor 51 CAAAGCAGAAAGGCTG-----------ACAGATCAA-------------- 75
BSNT_01336___ 74 CTGATATTGCATGGTACTGGGTTGATTTTTA-CGGCC--CGGAGGATACG 120
|||||||..||||..|||...|||||..| |.||| ||||.|| .
BL03116___cor 76 --GATATTGAGTGGTTTTGGACCGATTTCGATCAGCCTTCGGAAGA---A 120
BSNT_01336___ 121 GAAACGGCGTTATTG------AGAGATTTTTTTCATTTTCACCCGCTTGC 164
||| |..|..||| ||..| ||||||.||||||||..|..|
BL03116___cor 121 GAA---GTCTCCTTGCTCAAAAGCCA---TTTTCACTTTCACCCTTTATC 164
BSNT_01336___ 165 CATTGAGGATTGCTTCCAGCACATGCAGCGGCCGAAGCTTGACCATTATG 214
..|.||.||.|||.|.||.|.|.|||||||.||.|||||.||.||.||.|
BL03116___cor 165 GGTCGAAGACTGCGTACATCGCTTGCAGCGTCCCAAGCTCGATCAATACG 214
BSNT_01336___ 215 ACGGCTATCGTTTTTACGTGATTCATGCGCTGAATAAGGAAACACTT--G 262
|.|..||||.|||||.|||.||.||||||.|||||.| |||.|||| |
BL03116___cor 215 AAGATTATCTTTTTTTCGTCATACATGCGTTGAATCA--AAAGACTTTGG 262
BSNT_01336___ 263 AGACGGAGGAAGTCGATATCTTTC------AAGGCGAAAAATTT-GTCGT 305
.|.|.||.|||||.||| |..||| |||| |||| .||||
BL03116___cor 263 CGTCTGAAGAAGTTGAT-TTATTCGTTGGAAAGG------ATTTCATCGT 305
BSNT_01336___ 306 CACCTTTCATTT---------ACACG--------------AAACGCCAGG 332
.||.|||||||| |.||| |.|.|.|||.
BL03116___cor 306 TACATTTCATTTTCATCACTCAGACGGCATTGAAAAAGTAAGAAGACAGC 355
BSNT_01336___ 333 TATCGCTAAAGTCCGGGAGCGTTTGTATGCTTCACCGGATATATTGAAAA 382
|.|||..||| |.|.||| ||| ||.|||
BL03116___cor 356 TTTCGGAAAA--CAGCGAG---TTG-------------------TGGAAA 381
BSNT_01336___ 383 AAGGGCCCGGG-CATATTTCTTATATGATCATGGATCAGCTTGTTGATGA 431
||.||.||||| ||.||..|.||||||.||||||||..||||||.||.||
BL03116___cor 382 AACGGACCGGGCCACATCGCCTATATGGTCATGGATACGCTTGTGGACGA 431
BSNT_01336___ 432 ATATTTTCCTCTCGTGTATAAAATCGAAGACCGGCTGAATGAAATTGAAG 481
||||||.||..|..|.||.|||||.||||||||.||.||||||||||..|
BL03116___cor 432 ATATTTCCCGATTCTTTACAAAATAGAAGACCGCCTCAATGAAATTGCCG 481
BSNT_01336___ 482 AAAGCCGTCCCCA-CAAAACGTATGGAATGCTGATGAACGAGGTGTTTGA 530
|||| ||.|..|| .|||||||||||||.|||||||||||||||||||||
BL03116___cor 482 AAAG-CGACAGCAGGAAAACGTATGGAACGCTGATGAACGAGGTGTTTGA 530
BSNT_01336___ 531 TCTCAGAACAGACCTATTGCATTTAA----GACGG---ACGATTATCCCG 573
|.||.|....||||| ||||| || || ||.||.||.|||
BL03116___cor 531 TATCCGTGGCGACCT------TTTAAAGCTGA-GGAAAACAATCATTCCG 573
BSNT_01336___ 574 ATGCGTGATTTGCTCTACCGGATTTTAAGCCTTGACCATGT-GAAAGAGC 622
|||||.||||||||.|||||||||||||.|.|||| .||.| .|||||..
BL03116___cor 574 ATGCGGGATTTGCTTTACCGGATTTTAAACATTGA-AATTTCAAAAGAAA 622
BSNT_01336___ 623 AGCGGGAGACG-AAAGCCTATTTCAGCGACATATATGATCATTTGTTAAA 671
|.||.|| ||| |||||.||||.|||||||||.||.||.|||.|.||.||
BL03116___cor 623 ACCGCGA-ACGAAAAGCGTATTACAGCGACATTTACGACCATCTCTTGAA 671
BSNT_01336___ 672 GTTGTCTGAAATTGTGGAATCCAACCGTGACATGACGTCCGACTTGCGTG 721
|.||.|.|||||.||.|||..|||||||||||||||..||||.|||.|.|
BL03116___cor 672 GCTGGCCGAAATCGTCGAAAACAACCGTGACATGACAGCCGATTTGAGGG 721
BSNT_01336___ 722 ACAGCTACGTGACGCTAAACTCAAACCGGATGAATGCGATTATGATGACA 771
||||||||..||||||.|||||.|||||||||||.||.|||||||||||.
BL03116___cor 722 ACAGCTACCAGACGCTCAACTCCAACCGGATGAACGCCATTATGATGACG 771
BSNT_01336___ 772 CTGACGATCGTATCAACCATTTTCATCCCGCTCACCTTTATTACCGGTGT 821
|||||||||||.|||||.|||||.||.|||||||||||.|||.||||.||
BL03116___cor 772 CTGACGATCGTCTCAACGATTTTTATTCCGCTCACCTTCATTGCCGGAGT 821
BSNT_01336___ 822 ATACGGTATGAACTTCGACTTTATGCCGGAGCTGCATTGGAAATACGGAT 871
.|||||.||||||||.|||...|||||.||.|||||||||...|||||.|
BL03116___cor 822 GTACGGCATGAACTTTGACAACATGCCTGAACTGCATTGGCGCTACGGCT 871
BSNT_01336___ 872 ATTTCGCTGTACTTGGCCTGATGGCTGCGCTTGTGATTGGAATGCTGATT 921
||||.....|.||.||..|.|||||.||..||||....||.|||.|..|.
BL03116___cor 872 ATTTTTTCATCCTCGGAATAATGGCAGCCGTTGTCGCCGGCATGATCTTC 921
BSNT_01336___ 922 TGGTTTAGATATAAAGGATGGTTCAATATTTTTAAATGA 960
|||||..|..|||||||||||||..|.|||||.||.|.|
BL03116___cor 922 TGGTTCCGGCATAAAGGATGGTTTGACATTTTCAAGTAA 960
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