Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01281 and BL03100

See Amino acid alignment / Visit BSNT_01281 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:48
# Commandline: needle
#    -asequence dna-align/BSNT_01281___yflL.1.5803.seq
#    -bsequence dna-align/BL03100___yflL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01281___yflL-BL03100___yflL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01281___yflL-BL03100___yflL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01281___yflL
# 2: BL03100___yflL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 307
# Identity:     185/307 (60.3%)
# Similarity:   185/307 (60.3%)
# Gaps:          65/307 (21.2%)
# Score: 584.0
# 
#
#=======================================

BSNT_01281___      1 ATGCTTCAATACCGAATCATTGTAAACGGCCGGGTTCAAGGTGTGGGCTT     50
                     ||||||||||||.|||||||||||.||||.||.|||||.||.|||||.||
BL03100___yfl      1 ATGCTTCAATACAGAATCATTGTAGACGGACGCGTTCAGGGCGTGGGATT     50

BSNT_01281___     51 TCGCTATTTTGTTCAAATGGAAGCTGATAAGCGAAAACTGGCCGGCTGGG    100
                     ||||||||||||||||||||||||.|||||.|..|||.||.|.|||||||
BL03100___yfl     51 TCGCTATTTTGTTCAAATGGAAGCAGATAAACACAAATTGACAGGCTGGG    100

BSNT_01281___    101 TCAAAAACCGTGATGACGGGCGTGTCGAGATTTTGGCAGAGGG---TCCG    147
                     |...||||||.||.|||||....||.||.||....||.|||||   |..|
BL03100___yfl    101 TTCGAAACCGCGACGACGGCACAGTTGAAATCCGCGCCGAGGGACTTGAG    150

BSNT_01281___    148 GAAAACGCCCT---GCAATCGTTTGTTGAGGCTGTAAAGAACGGAAGCCC    194
                     ||||   .|||   ||||   |||.|..|.||..|..|.||.|||||.||
BL03100___yfl    151 GAAA---GCCTGAAGCAA---TTTTTAAAAGCAATTCAAAAAGGAAGTCC    194

BSNT_01281___    195 TTTCTCAAAGGTTACCGACATCTCTGT-----------------------    221
                     .||||||||.||.||.||      |||                       
BL03100___yfl    195 ATTCTCAAAAGTAACGGA------TGTAAAAGTGGAAGAAACCAAAGAAT    238

BSNT_01281___    222 --GACTGAATCCCGCAGCCTTGAAGGCCATCATCGATTTTCTATTGTTTA    269
                       |||.||.|||...||  ||.||   .||||       .||||||.   
BL03100___yfl    239 TGGACGGATTCCAAAAG--TTTAA---TATCA-------GCTATTGA---    273

BSNT_01281___    270 CTCATAA    276
                            
BL03100___yfl    273 -------    273


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