Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06190 and BL03099
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_06190.1.5803.seq
# -bsequence dna-align/BL03099___sdpI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06190-BL03099___sdpI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06190-BL03099___sdpI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06190
# 2: BL03099___sdpI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 760
# Identity: 392/760 (51.6%)
# Similarity: 392/760 (51.6%)
# Gaps: 245/760 (32.2%)
# Score: 825.0
#
#
#=======================================
BSNT_06190 1 AT--GAAAAAATATTTCTTTGCAC----TAAT---TATGATAGCCTTAAC 41
|| |||||.|.||||.||.||.| |||| ||||| |.| |||.
BL03099___sdp 1 ATGAGAAAACACATTTTTTCGCTCGCTATAATCGCTATGA-ATC--TAAT 47
BSNT_06190 42 AATTTTAGCTTGGGTTATAACATAT--TCACACTTAC---------CTAA 80
.|| .||||..||..|.||| .||||.||.| |.||
BL03099___sdp 48 CAT------GTGGGCAATCGCTTATCCGCACATTTCCGGTCAAGTTCCAA 91
BSNT_06190 81 TGAATTGG-CAAC--------------ACACTGGGGTAT-------AAGT 108
|..||||| ||.| ||| ||||| ||.|
BL03099___sdp 92 TCCATTGGTCATCTTCGGGGGAAATCGACA----GGTATGCTTCCAAAAT 137
BSNT_06190 109 GGTGAAGCAGATGACTTTTCAAAGAAACCTACGGCCATAGCAACG-TTGG 157
| ||||| |||| ||| ||||| | ||||
BL03099___sdp 138 G--GAAGC-GATG-CTT----------------GCCAT------GATTGG 161
BSNT_06190 158 -----TAGGTATAATGATAGTACAATATAT-TCTT-ATGGTGCTT-ATTC 199
|.|.|.| || ||||| |||| || ||.||| |..|
BL03099___sdp 162 GCTGCTCGTTTT--TG---------TATATGTCTTGAT-GTTCTTAACGC 199
BSNT_06190 200 CTAAAATTGATCC---CCGACGAAACTATCCGACCTTTACTCG------- 239
|.|||||.||||| |.||..|||||||| |.||||..|||
BL03099___sdp 200 CGAAAATCGATCCGCGCAGAAAAAACTATC--AGCTTTTTTCGAAGACTT 247
BSNT_06190 240 --TGCATACTTATCTATTTTTAATACCATGTTTCTCGTCTTATTTCTCAT 287
|.|||.||.||| |||.|||||.|.||..|.||.|.|||.||
BL03099___sdp 248 ATTACATTCTCATC-------AATGCCATGCTGCTTATATTTTCTCTGAT 290
BSNT_06190 288 TAATTTGATTACAATATTGACGGGGCT-GGGTATTA-------------A 323
.||..||.||...||..||||.||||| ||||||.| |
BL03099___sdp 291 CAACGTGCTTGTTATCATGACCGGGCTCGGGTATGATCTGCCGGCGGGCA 340
BSNT_06190 324 ACTTCCTATTCCATATTTAGGTTCATTTATTCTTGGAGCTATATTCATGG 373
.|.||.|| || ||||| ||.|.||.|||.||||.||.|
BL03099___sdp 341 GCATCGTA--CC-------GGTTC-----TTGTAGGCGCTCTATTAATCG 376
BSNT_06190 374 TTTTTGGTAATTTTATTCAGCAGGTTAGACCG-----AATTTTTTCTTGG 418
|..|.||.||||...|.|.| || ||.||| |.||||||.|.||
BL03099___sdp 377 TCATAGGCAATTACCTACCG-AG---AGTCCGCTCCAACTTTTTTTTCGG 422
BSNT_06190 419 GAATTAGAACTCCTTGGACATTAAGCAGTGA---AAATGTATGGAGGCTT 465
||...||||| |||||||||||.|||||||| || |.||||.....
BL03099___sdp 423 GATCAAGAAC-CCTTGGACATTGAGCAGTGATTCAA---TCTGGAAAAAA 468
BSNT_06190 466 ACACATAGATT------GAGTTCAAGAATATTTGTTCTAGCCGGAATCAT 509
||.||.||||| || ||| |||||..|.|.||.|||.|..|
BL03099___sdp 469 ACCCACAGATTTGCGGCGA----AAG--TATTTACTTTGGCAGGACTTCT 512
BSNT_06190 510 TA--------------TTGTTTTAACTGCATTTATTCCTG-AGTCTT--T 542
.| |||||.| ||.|.|.|||.| |.||.| |
BL03099___sdp 513 AATAGCTGCGGACGGGTTGTTAT-----CAATCAGTCCAGAAATCATGCT 557
BSNT_06190 543 TACCGAGCCGATTATTTTTATAGCGGCAA-----TAGG-----TAGTATA 582
| |||.||||||| ||||| |.|| || |||
BL03099___sdp 558 T------CCGGTTATTTT------GGCAACGGTTTTGGCGCCCTA-TAT- 593
BSNT_06190 583 CTCTTATCCGTATTCGCATCTTATTTCATATATCAAAAAGAGCTAAATA- 631
|||| ||||||.|..|.||.|..||.||..|.||||
BL03099___sdp 594 ---TTAT-----------TCTTATGTTTTGTACCGGAAGGAAATCAATAT 629
BSNT_06190 632 -AATAG---- 636
||.||
BL03099___sdp 630 GAAAAGCTGA 639
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