Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00602 and BL03096
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_00602___yckD.1.5803.seq
# -bsequence dna-align/BL03096___yckD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00602___yckD-BL03096___yckD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00602___yckD-BL03096___yckD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00602___yckD
# 2: BL03096___yckD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 402
# Identity: 191/402 (47.5%)
# Similarity: 191/402 (47.5%)
# Gaps: 150/402 (37.3%)
# Score: 418.5
#
#
#=======================================
BSNT_00602___ 1 ATGAAACGAATAACCATTAACAT---CATAACAATGTTC-ATTGCAACGA 46
|| || ||| |||.| .|||| |..
BL03096___yck 1 ---------------------ATGCGCA-AAC--TGTGCGTTTGC--CTG 24
BSNT_00602___ 47 CT----GTCATTTCTCTGACCGGTACAGCTG--AGGCCGCTGAAAAACAG 90
|| ||||||.|.|||.|..||||.|||| |.||| ||
BL03096___yck 25 CTTCTCGTCATTCCGCTGTCATGTACGGCTGTCATGCC-CT--------- 64
BSNT_00602___ 91 CAGCAGCCTCCCGCAAATGTTACAC---------------TGACAGATCA 125
|.||||.|.|..|| |||| ||||.||..|
BL03096___yck 65 ---CTGCCTACGGGGAA----ACACGCGTTTATCAAGAGTTGACGGACAA 107
BSNT_00602___ 126 GCAAAAGAAAGAGGTTGAACAACTGG-----------AAGCAGAGATTCT 164
|||.||.||.| |||||| ||| ||.|||.|
BL03096___yck 108 GCAGAAAAATG---------AACTGGCTTCTTTGCAAAAG--GACATTAT 146
BSNT_00602___ 165 TAAAAAGCGCAAAGACGTAATCTCAAAGTATGTACAATACGGTGTCCTGC 214
..|||||...|||.|..|.|||...||||||||..|.|||||..|.||..
BL03096___yck 147 GGAAAAGAAAAAACAGCTGATCAATAAGTATGTGGAGTACGGAATACTTG 196
BSNT_00602___ 215 CTAAAGAAAGAGGAGAACACATTAA--AAATCA---CTTGGACAAACACT 259
.|.|.|||||.||| || |||||| || ||..
BL03096___yck 197 ATCAGGAAAGGGGA---------AAGGAAATCAAGTCT--------CATA 229
BSNT_00602___ 260 TTGAAATG----ATGAAA--------CAAAACGGCTTTGTTCCA------ 291
||||||.| |||||| .||.||||.|||.|.|||
BL03096___yck 230 TTGAAAAGCGCTATGAAAAAGAGCGGGAAGACGGATTTTTGCCAAAGTGG 279
BSNT_00602___ 292 AAGCACCAT---------CCTCATCCGCAT-AAATTTGAAAAAAGACATT 331
||||||||| ..||..|||||| |.||| ||||
BL03096___yck 280 AAGCACCATAAAGAAAAGTTTCGCCCGCATCACATT----------CATT 319
BSNT_00602___ 332 AA 333
||
BL03096___yck 320 AA 321
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