Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00986 and BL03095
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_00986___ydhE.1.5803.seq
# -bsequence dna-align/BL03095___ydhE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00986___ydhE-BL03095___ydhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00986___ydhE-BL03095___ydhE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00986___ydhE
# 2: BL03095___ydhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1252
# Identity: 862/1252 (68.8%)
# Similarity: 862/1252 (68.8%)
# Gaps: 101/1252 ( 8.1%)
# Score: 2780.5
#
#
#=======================================
BSNT_00986___ 1 ATGAAGACAGTAT--TGATTTTGAATTTTCCTGCGGAAGGCCATGTGAAT 48
|||| |.|.||| |.||..|.||||||||.||||||||.|||||.|||
BL03095___ydh 1 ATGA--AAAATATTCTAATCGTCAATTTTCCGGCGGAAGGTCATGTCAAT 48
BSNT_00986___ 49 CCTACCTTAGGCATTACAAAAGCGTTTTCCGATA-AGG-GATATGATGTC 96
|||||.|||||.||.||.|||||.|||.|.||.| ||| ||.| ||||.
BL03095___ydh 49 CCTACATTAGGGATCACCAAAGCATTTGCTGACAGAGGCGACA--ATGTG 96
BSNT_00986___ 97 CATTATATATCCACTGAAAAATATAAAAAACGATTAGAAGCAGCG--GGA 144
||.|||.|.||.||.|||||.||||||.|..|..|.||.| ||| |||
BL03095___ydh 97 CACTATCTTTCAACAGAAAAGTATAAAGACAGGCTGGAGG--GCGTCGGA 144
BSNT_00986___ 145 GCAACGGTCCATCTTCACCGGGATCTGCTGCG-AACGACACCTATTCATG 193
||.||.||.|||.|..||...||||||.||.| |||| |.|.||||.||
BL03095___ydh 145 GCTACCGTTCATTTATACAAAGATCTGGTGAGAAACG-CGCATATTGAT- 192
BSNT_00986___ 194 TCGGTTCGCCCAAT---------GGCATTCTTGATTTCGTGAAAATCCAT 234
||.||| |||.|||||||.||..|.|||||.|||
BL03095___ydh 193 --------CCGAATTCACCGTCCGGCCTTCTTGAATTTTTAAAAATTCAT 234
BSNT_00986___ 235 ATCAAAACGTCATTGGACATTTTACAGATTGTCAAAGACTTATCTAAGAG 284
.|||||||.||..||.|.|||.||.|.|||||.|||||..|.||.||.||
BL03095___ydh 235 CTCAAAACCTCGCTGTATATTCTAGACATTGTAAAAGAGCTGTCCAAAAG 284
BSNT_00986___ 285 CATTCAATTTGATTTTGTTTATTATGATAAATTCGGCGCGGGGGAATTGG 334
||||...||.|||.|.||.||||||||.|.||||||.|||||.|||||||
BL03095___ydh 285 CATTTCGTTCGATGTCGTGTATTATGACACATTCGGTGCGGGTGAATTGG 334
BSNT_00986___ 335 TAAGGGATTACTTAGATATTCCAGGAGTCTCTTCATCGGCGTC-TTTCTT 383
|.||||||||.||..|.|||||.|||.||.||||.|||||.|| |||| |
BL03095___ydh 335 TCAGGGATTATTTGAACATTCCGGGAATCGCTTCGTCGGCTTCATTTC-T 383
BSNT_00986___ 384 GTTTGGCGAGGAGCACCTGAAAATCCTGCCGCTGCATCCGGAGTCTGGAG 433
.||.||..|.||.||...|||.||.||||||.||||||||||.||.||.|
BL03095___ydh 384 CTTCGGACAAGAACATAAGAAGATTCTGCCGTTGCATCCGGATTCAGGCG 433
BSNT_00986___ 434 CGCCGCTTGAATTGGATCAAGAGTGCGAAGATCTTTTGGCAAAAATGAAA 483
||..|||..|.|||||..||||.||.||.||.||..|.||..||.|||||
BL03095___ydh 434 CGGAGCTGCACTTGGACAAAGAATGTGAGGACCTGCTTGCGGAACTGAAA 483
BSNT_00986___ 484 GAAACGTACGGTGTTGCCCC---GAAAAACCTGGTTCAATTCATGAACAA 530
||||.||||||.||..|.|| |.|.| |.|| .||.||.||||.|||
BL03095___ydh 484 GAAAAGTACGGCGTCTCGCCTAGGCATA--CAGG-ACAGTTTATGAGCAA 530
BSNT_00986___ 531 TAAAGGGGAATTGAACGTAGTGTATACAAGCCGTTATTTTCAGCCAGAAA 580
|.|.|.|||..|||.|||.||||||||||||||.|||||||||||.||.|
BL03095___ydh 531 TCAGGCGGAGCTGACCGTTGTGTATACAAGCCGGTATTTTCAGCCTGACA 580
BSNT_00986___ 581 GTGATCGTTTCGGGGATGAATGT-CTGTTTATCGGGCCAAGCTTTCCAAA 629
|.|..|||||.||||||| |||| |||||||||||.||..|.||||||||
BL03095___ydh 581 GCGGCCGTTTTGGGGATG-ATGTGCTGTTTATCGGCCCGCGTTTTCCAAA 629
BSNT_00986___ 630 GAGAGCGGAAAAAACGGATTTCCCGATTGAACAGCTAAAAGATGAGAGTG 679
|.|...|||.||.||.|||||.|||.|.|||..|.|.||..||||||..|
BL03095___ydh 630 GCGCCTGGACAAGACCGATTTTCCGGTAGAATCGTTGAAGAATGAGAAAG 679
BSNT_00986___ 680 TCATTTATATTTCAATGGGGACTGTACTGGATCATACAGAGGATTTCTTC 729
|||||||||||||||||||.||.|||||.|...|.||.|.||||||.|||
BL03095___ydh 680 TCATTTATATTTCAATGGGAACCGTACTTGGCAAAACTGCGGATTTTTTC 729
BSNT_00986___ 730 AACCTTTGTATTGATGCATTTTCAGGCTTT-AACGGAAAAGTCGTCATCG 778
||..|.||.|||||||| |||||..|.||| .||||.||.||.|||||||
BL03095___ydh 730 AATATGTGCATTGATGC-TTTTCGTGATTTCGACGGCAAGGTTGTCATCG 778
BSNT_00986___ 779 CTGCCGGAGAAAAAGCGGAC----CTGACCAAATTAAAGCAGGCGCCGGA 824
|.||.||.||||||.||||| |.| ||||||||| |.|.||||||
BL03095___ydh 779 CCGCTGGCGAAAAATCGGACTACGCGG---AAATTAAAG-AAGTGCCGGA 824
BSNT_00986___ 825 AAACTTTATCATTGCTCCGTATGTCCCTCAGCTGGAAGTGCTGGAGCAAT 874
..|.||||||||.||.||||||||.||.||..|.||.|||||..|..|..
BL03095___ydh 825 GCATTTTATCATCGCCCCGTATGTGCCGCAATTAGAGGTGCTTAAAGAGG 874
BSNT_00986___ 875 CGGATGTTTTCATTACACACGGCGGAATGAACAGCGTAAACGAAGGCATT 924
|.|||||.|||||.||.||||||||.|||||||||||.||.||||||||.
BL03095___ydh 875 CCGATGTGTTCATCACGCACGGCGGCATGAACAGCGTCAATGAAGGCATC 924
BSNT_00986___ 925 CATTTCAGCGTGCCACTGGTTGTCATGCCTCATGACAAGGATCAGCCGAT 974
||||.|.|.||.||..|||||||..|.||.|||||.||.|||||||||||
BL03095___ydh 925 CATTACCGTGTCCCGATGGTTGTGCTTCCGCATGATAAAGATCAGCCGAT 974
BSNT_00986___ 975 GGTGGCGCAGCGTCTCTCTGAA----CTCCATGCAGGCTATGTCATC--T 1018
|.|.||.||||| || |||| ||..||||.|| ||.||.|| |
BL03095___ydh 975 GATCGCCCAGCG---CT-TGAAAGAGCTGAATGCGGG--ATATCCTCTGT 1018
BSNT_00986___ 1019 CTAAAGATGAAGTCAATGCCCAAATATTAAAACAGGCCGTAGATGAGGTT 1068
.|..|||.|||||.|||||..|||.|||.|.|.|.||.|.|||..|.|
BL03095___ydh 1019 TTGCAGAAGAAGTGAATGCTGAAAGATTGAGAGATGCAGCAGAACAAG-- 1066
BSNT_00986___ 1069 TTGCGCA---ACGATCAGTATATGGCAGGCATTAAAAAAATCAATCAAAG 1115
|||.|| |||...|.|||..||.|||.|||.|||||||..||.||||
BL03095___ydh 1067 -TGCTCACTGACGGAAAATATCAGGAAGGTATTCAAAAAATTGATGAAAG 1115
BSNT_00986___ 1116 CTTCAAAGAATGTATGGACATGGAAGAAGTGATGGAGCGGATTGATGAGT 1165
|||||...|.||.||||||||..||||.|...|||.|||.||||||||.|
BL03095___ydh 1116 CTTCAGCAACTGCATGGACATTAAAGATGCATTGGCGCGTATTGATGAAT 1165
BSNT_00986___ 1166 TGATTCGCC-----AAAAA--------------AACA----------AAT 1186
||.||.| ||||| |||| |.|
BL03095___ydh 1166 --ATACGGCGCGGAAAAAAGTCGCTGCAGCCATAACAGAAAGCCGCTACT 1213
BSNT_00986___ 1187 AA 1188
||
BL03095___ydh 1214 AA 1215
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