Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01343 and BL03094
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_01343___yfjL.1.5803.seq
# -bsequence dna-align/BL03094___yfjL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01343___yfjL-BL03094___yfjL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01343___yfjL-BL03094___yfjL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01343___yfjL
# 2: BL03094___yfjL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 859
# Identity: 442/859 (51.5%)
# Similarity: 442/859 (51.5%)
# Gaps: 305/859 (35.5%)
# Score: 878.0
#
#
#=======================================
BSNT_01343___ 1 ATGAAAAA-----ACTTG----------TGTTTG----GCT--------- 22
|||||||| .|||| ||.||| |||
BL03094___yfj 1 ATGAAAAAGAAAGTCTTGTATAGCGTGTTGATTGTGCTGCTCGTTTCCTT 50
BSNT_01343___ 23 --TGCTTGCC-ATTGCATTATTCGGATGCGGACTATATATCTATCATGTA 69
|||||||| .||.|| |.|| || |||
BL03094___yfj 51 TGTGCTTGCCGCTTACA--------ACGC-----------CT-TCA---- 76
BSNT_01343___ 70 TGGTTCGGTGATCCATTTTCGAAAAATGCTGCAGAACAGAAGCTAGTCTC 119
.|||..|||| ||.|| ||| ||||||| |||||
BL03094___yfj 77 ----ACGGAAATCC-----CGTAA------GCA----AGAAGCT-GTCTC 106
BSNT_01343___ 120 ----------------TTATGTGAAACAAAC--CTATCCTAAGAAAGAAA 151
||||.|| ||..|| |||||||.|.|||||..
BL03094___yfj 107 AAACGGCGCTTGAGCATTATTTG--ACTGACCGCTATCCTGAAAAAGACT 154
BSNT_01343___ 152 TCAAGATCACGAATGGGGTATATAACGCTAA----AA--CCTCTGAATAT 195
|...||| |||..|.||.||.|| ||| || .|.|.||||||
BL03094___yfj 155 TGCGGAT--CGACAGCGGCATCTA----TAATTTCAAGTTCACGGAATAT 198
BSNT_01343___ 196 GTATTCGAAG-CA-----ACC-----TCCCAATCTCATCGCTACCCAATG 234
|||||.|||| || ||| |||.||.|.||..|.| |||.||.
BL03094___yfj 199 GTATTTGAAGTCACTGACACCGGTGATCCAAAGCGCAAAGAT-CCCTATC 247
BSNT_01343___ 235 TG--TAC---GA-AGGGATTTCTGCATCCTAAAGTA---ACGTGCGATGG 275
|| ||| || |||| |||.|.||.|||.||||| ||| ||.||
BL03094___yfj 248 TGCTTACTTTGAGAGGG-TTTGTTCAACCTGAAGTATACACG---GACGG 293
BSNT_01343___ 276 AAT---TGAAGAAGCGTATACCGAATCAGTATCAA--AAC-----ATGTA 315
||| |||||| |||.| |||| ||| |||.|
BL03094___yfj 294 AATCTATGAAGA----------GAACC----TCAATGAACCGCTGATGGA 329
BSNT_01343___ 316 ---------AATGAAGAAGCAACGAAGGCAATCGAAGCAGATCTGA--AA 354
| |||||||||...||.|.||||.|||| |.|.|.| ||
BL03094___yfj 330 GCGGCTTGGA--GAAGAAGCAGGAAAAGAAATCAAAGC-GCTTTTATCAA 376
BSNT_01343___ 355 AAAGCGGTTCCT----CGACTTATAAAAGCTGATGCTGC-TTTG--AGTA 397
|||| |.| |.|||.|.|.|.|.|||.| ||| |.|| ||||
BL03094___yfj 377 AAAG-----CATAGACCAACTGAAAGACGTTGACG-TGCATGTGGAAGTA 420
BSNT_01343___ 398 TT-----GAAAACGGACAGTTCACGTTAGATACAAAATGGAACAAACAGC 442
|| ||||.|.||.|..|.||| ||||||||.|.||| |||
BL03094___yfj 421 TTAAAAGGAAAGCTGAAAAATGACG-------CAAAATGGGAGAAA-AGC 462
BSNT_01343___ 443 --TGGCT--GAAAAAGCGCCTATGAGCATGACGATTCA---GTTA---GA 482
..||| ||.|| |||.|| ||| |||||| .||| ||
BL03094___yfj 463 ATCCGCTTAGACAA---GCCGAT--GCA----GATTCATATTTTACTTGA 503
BSNT_01343___ 483 CGCCAGCGGGTTATCAAAAA--CAGATGCCGCAAAG-----------ATG 519
.|| |.|||| |.| ||||.|||| |.|
BL03094___yfj 504 TGC-----------CGAAAATGCCG--GCCGAAAAGAAGTATACAATACG 540
BSNT_01343___ 520 GCGGAAACG-GTCAGAAAAACGC----TTAATGAA-AAGGGATATAC--A 561
|||.|||.| .|||| ||| |.|||||| ||||| ||| .
BL03094___yfj 541 GCGCAAAAGATTCAG-----CGCCTGTTGAATGAAGAAGGG---TACGAC 582
BSNT_01343___ 562 TACTCAAACGGCACGAT--------AGACTGT--ATGCAGAAG------- 594
|||..||.||..||||| |.|.|.| |||..||||
BL03094___yfj 583 TACGAAAGCGTGACGATTAATGCCAACATTTTTGATGGGGAAGATATTAA 632
BSNT_01343___ 595 -GACGGGG---TCGGCGGTATTGGATATGTCAAATATTCAATTG-ATTTT 639
||||.|| |||||.||.|| ||||| || | |..|.
BL03094___yfj 633 AGACGAGGAGATCGGCTGTCTT---------AAATA--CA---GCACCTC 668
BSNT_01343___ 640 CTTTCAAAAGCAGCTAC-----TC-AGTCAAACGATGCAGAGGAACTAGG 683
||||.|||| |..||| || ||...||.||||..||.||.|||
BL03094___yfj 669 CTTTGAAAA--AAATACGGAAATCAAGCTGAAGGATGTTGAAGAGCTA-- 714
BSNT_01343___ 684 AA--GTTAA 690
|| .||||
BL03094___yfj 715 AATGATTAA 723
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