Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01342 and BL03092

See Amino acid alignment / Visit BSNT_01342 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_01342___yfjM.1.5803.seq
#    -bsequence dna-align/BL03092___yfjM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01342___yfjM-BL03092___yfjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01342___yfjM-BL03092___yfjM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01342___yfjM
# 2: BL03092___yfjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 516
# Identity:     322/516 (62.4%)
# Similarity:   322/516 (62.4%)
# Gaps:          99/516 (19.2%)
# Score: 947.5
# 
#
#=======================================

BSNT_01342___      1 ATGAAACGGCTATGCATCATCCCCTGCGGCAAGAAAAAAATCTGGGACGT     50
                     ||||||.|.||.|||||||||||.|||||...|||||||||||||||.||
BL03092___yfj      1 ATGAAAAGACTTTGCATCATCCCGTGCGGGGCGAAAAAAATCTGGGATGT     50

BSNT_01342___     51 CCAGCCTGATGCCG------GGCCGGTAAG-AGCAGAGGACGCTTATCTC     93
                           |||| |||      ||||.||..| .|||.||||.|..|||||.
BL03092___yfj     51 ------TGAT-CCGGACATCGGCCCGTCCGCCGCAAAGGATGTCTATCTA     93

BSNT_01342___     94 AGCCCGTTTCATCAGGCGTGCGAACG---GTATGCGAAAGCATTTTT--C    138
                     |||||.|||||.|.|||||||   ||   .||||||.|..|||||||  |
BL03092___yfj     94 AGCCCATTTCACCGGGCGTGC---CGCGCATATGCGCAGACATTTTTTAC    140

BSNT_01342___    139 GATGAGTGGGTGATTTTGTCTGCGAAGCACGGGTTCCTCCGCCCTGATGA    188
                     |  ||.|||||||||.|.||.||.||.|||||.||..|....|||||.||
BL03092___yfj    141 G--GATTGGGTGATTCTTTCAGCAAAACACGGTTTTTTAAAACCTGAAGA    188

BSNT_01342___    189 TCTCGTTTCGGGAAATTACGATGTCACTTTTGGCACCGGTCATCCGGAAA    238
                     |.|||||.|.|.|||.||.||.|||||.|||||.|...|.||.||.||.|
BL03092___yfj    189 TATCGTTCCTGAAAACTATGACGTCACATTTGGGATGCGCCACCCAGAGA    238

BSNT_01342___    239 TCATGACAGCGGACGAGCTG-AGCCGCCAATTTCAC-GAAAAAGGCTTTT    286
                     |.|||.|.|..|.||.|||| ||.|.|.|..|..|| ||||||      .
BL03092___yfj    239 TTATGCCGGATGGCGGGCTGAAGGCTCAAGGTGAACGGAAAAA------C    282

BSNT_01342___    287 CTGAT--AT--CGAAGAGCTAGTCATGCTTGGCGGAAAAAAATATCGAAG    332
                     |||||  ||  |||.||..|.||||||||.||||||||||||||  .|.|
BL03092___yfj    283 CTGATGGATTGCGATGAAATCGTCATGCTCGGCGGAAAAAAATA--CAGG    330

BSNT_01342___    333 C--GTTCT---AAACGCCGT----CATCGGAGAACACCAGCATATCA---    370
                     |  ||.||   .|||| .||    ||.||||      |||||.||||   
BL03092___yfj    331 CCTGTACTGAGGAACG-TGTTTGGCAGCGGA------CAGCAGATCATAT    373

BSNT_01342___    371 ----GCTGGCCGCTATCATCTTACAAAGGCATAGGCTATATGCTCCAAGC    416
                         ||||||.|       ..|||...||.||.|||||||||||.||.||
BL03092___yfj    374 ACCCGCTGGCGG-------GATACCGGGGAATCGGCTATATGCTGCAGGC    416

BSNT_01342___    417 GCTGAACCGGGCTGTTGAAGAA----------------AAGCATG----A    446
                     ||||||.||||||||.||.|||                || ||||    |
BL03092___yfj    417 GCTGAAGCGGGCTGTCGATGAAGGCCGGGAACTTGGTGAA-CATGAAAAA    465

BSNT_01342___    447 ACTGTAG---------    453
                     |.|| ||         
BL03092___yfj    466 AATG-AGTTTTTTTAA    480


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