Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01338 and BL03091
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_01338___yfjO.1.5803.seq
# -bsequence dna-align/BL03091___yfjO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01338___yfjO-BL03091___yfjO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01338___yfjO-BL03091___yfjO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01338___yfjO
# 2: BL03091___yfjO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1456
# Identity: 1072/1456 (73.6%)
# Similarity: 1072/1456 (73.6%)
# Gaps: 119/1456 ( 8.2%)
# Score: 3892.5
#
#
#=======================================
BSNT_01338___ 1 -------GTGAACCAACAAAAGAAACAGGCGCCCGTC----GAACTGAAG 39
|||| ||| |||||.|.|| || |||.|.||.
BL03091___yfj 1 GTGAAACGTGA--CAA-AAAAGGATCA--------TCAGCAGAATTAAAA 39
BSNT_01338___ 40 GTCGGACA--AACCTTTCCGCTGACGATTAAGCGTCTCGGCATTAACGGA 87
|||||||| || ||||||||||||||.|||||.||||||||.||.||.
BL03091___yfj 40 GTCGGACAGCAA--TTTCCGCTGACGATCAAGCGCCTCGGCATCAATGGC 87
BSNT_01338___ 88 GAAGGTGTCGGCTATTTTAAGAAAAAAGTCGTCTTCGTGCCCGGCGCGCT 137
|||||.||||||||.||.||||||||||||||||||||.|||||||||||
BL03091___yfj 88 GAAGGCGTCGGCTACTTCAAGAAAAAAGTCGTCTTCGTCCCCGGCGCGCT 137
BSNT_01338___ 138 TCCTGGCGAAGAAGTTGTTGTGCAGGCCACAAAGGTCCAGCCGAAGTTTT 187
.||.||.||||||||.||.||..||||.||||||||.||.|||||.||||
BL03091___yfj 138 GCCGGGAGAAGAAGTCGTCGTCGAGGCGACAAAGGTTCATCCGAAATTTT 187
BSNT_01338___ 188 CGGAGGGCCGCATTAAGAAAATCCGCAAGGCG-TCTGAGCACCGGGTGGC 236
|.||.||.||..|.||.||..|.||||| .|| ||.||||||||.|| |
BL03091___yfj 188 CCGAAGGGCGGGTCAAAAAGGTGCGCAA-ACGTTCAGAGCACCGCGT--C 234
BSNT_01338___ 237 A--CCGCCTTGCCCTGTTTATGAGCAATGCGGCGGCTGCCAGCTTCAGCA 284
| |||||.|||....|.||||||||||||||.|||||||||||.|||||
BL03091___yfj 235 AAGCCGCCCTGCATCATCTATGAGCAATGCGGGGGCTGCCAGCTCCAGCA 284
BSNT_01338___ 285 CCTTGC--ATACAGCCAGCAGCTTCGGGA----AAAACGCGATATCGTCA 328
.||.|| ||..|| ||||||| || ||||||.||.|||||||
BL03091___yfj 285 TCTGGCTTATGAAG--AGCAGCT----GAAAGGAAAACGGGACATCGTCA 328
BSNT_01338___ 329 TTCAGTCTCTTGAACGCCATACGAAGTTTAAAGTTGA-------AAACAT 371
||||.||.||.|||||.||.|| ..||| |||| ||| ||
BL03091___yfj 329 TTCAATCGCTCGAACGGCACAC-CCGTT-----TTGACATCGGCAAA-AT 371
BSNT_01338___ 372 GGAAATCAAAGAAACGATTGGCATGGACAACCCGTGGAATTACCGCAATA 421
|||.||||.....|||||.||||||||.|||||||||.|.||.||.||||
BL03091___yfj 372 GGACATCAGGCCGACGATCGGCATGGAAAACCCGTGGCACTATCGGAATA 421
BSNT_01338___ 422 AAAGCCAATTCCAGATCGGACGCTCGCAAAGTGGGAGCATCATCGCCGGC 471
|||||||.||.|||.||||.|..|||.|||..||.|..||..|.|||||.
BL03091___yfj 422 AAAGCCAGTTTCAGCTCGGGCTTTCGAAAAACGGAAAGATGGTGGCCGGG 471
BSNT_01338___ 472 TTATACGGCCTTGATTCTCATGATATCGTGCCGATTAAAGACTGTATCGT 521
.|.|||||||||||.||.||...|.|.||.|||||||..||.||.||.||
BL03091___yfj 472 CTGTACGGCCTTGACTCGCACCGTCTTGTCCCGATTACGGAATGCATTGT 521
BSNT_01338___ 522 TCAGCATCCGGCAACGAACAAAACAACAGGC--ATCGTCCGCCGCA--TT 567
||||||||||||.|||||||||||.|| || |.|||| ..||| ||
BL03091___yfj 522 TCAGCATCCGGCGACGAACAAAACGAC--GCAAACCGTC--AAGCAGGTT 567
BSNT_01338___ 568 TTAGAGGACTTCAATGTGTCTGTTTATAATGAAAGAAAACGAAAAGGCGA 617
.|.||.||||||....|.||.||.||.||.|||.|.||.||.|..|||||
BL03091___yfj 568 CTTGAAGACTTCGGCATTTCCGTCTACAACGAACGGAAGCGCACGGGCGA 617
BSNT_01338___ 618 CGTTCGCACGATCGTGACGAGAGTCGGCTTTGAAACAGGCGAAGTGCAGG 667
.||.|||||||||||||||||.||||||||.||.||.||.||||||||||
BL03091___yfj 618 TGTCCGCACGATCGTGACGAGGGTCGGCTTCGAGACGGGGGAAGTGCAGG 667
BSNT_01338___ 668 TCGTGCTTGTAACTGCAAAAGAA-ACGCTTCCGCACAAG----------- 705
|.||.|||||.||..|||||||| || ||.||||.||||
BL03091___yfj 668 TTGTCCTTGTCACGTCAAAAGAAGAC-CTGCCGCGCAAGGAGCTCATTGC 716
BSNT_01338___ 706 -GAAGAAATCGTCAAAGCGATTCAAAAGCGATTGCCAGAGGTCAAATCCA 754
||||||||| ||| |||||..||||.||.||.|.|||..
BL03091___yfj 717 AGAAGAAATC----AAG--------AAGCGTCTGCCTGAAGTGACATCTG 754
BSNT_01338___ 755 TTATTCAGAATGTAAACGGGGCGAAAACCTCAGTGATTTTTGGTGAGAAA 804
|.|||||.||.||.|||...||.|||||.||.||..|.||.||.||..|.
BL03091___yfj 755 TGATTCAAAACGTCAACAAAGCCAAAACATCGGTTGTCTTCGGCGATGAT 804
BSNT_01338___ 805 ACAAAACAGCTC---GCCGGAAAAACAGTGATTCAAGAAGTGCTCGGCGA 851
|||| .|||| |||||.||.|..||.|||||.|||.|.|||||.||
BL03091___yfj 805 ACAA---GGCTCTTAGCCGGCAATATGGTCATTCAGGAATTTCTCGGAGA 851
BSNT_01338___ 852 CGTATCTTTTGAATTGAGCGCCCGCGCTTTCTTCCAGCTCAATCCGGAAC 901
.||.||.|||||..||||||||||||||||.||.||||||||||||...|
BL03091___yfj 852 GGTTTCATTTGAGCTGAGCGCCCGCGCTTTTTTTCAGCTCAATCCGATCC 901
BSNT_01338___ 902 AGACCGTCAAGCTGTATGATGAAGTGAAAAAAGCGGCGCAGCTGACCGGA 951
||||.||||||||||||||.|||||||||||||||||..|.||||||||.
BL03091___yfj 902 AGACAGTCAAGCTGTATGACGAAGTGAAAAAAGCGGCAAAACTGACCGGG 951
BSNT_01338___ 952 AAAGAAAAAGTCGTTGATGCGTATTGCGGCGTCGGCACTATCGGCATGTG 1001
...|||||||||||.||.||.|||||||||||||||||.|||||.|||||
BL03091___yfj 952 CGCGAAAAAGTCGTCGACGCATATTGCGGCGTCGGCACGATCGGAATGTG 1001
BSNT_01338___ 1002 GGTTGCGGACGGAGCGAAGGAAGTCCGCGGCATGGACGTCATCAAGGAAT 1051
|.|.||.|||||.||.||.|||.||||||||||||||||||||||.||||
BL03091___yfj 1002 GATCGCCGACGGGGCAAAAGAAATCCGCGGCATGGACGTCATCAAAGAAT 1051
BSNT_01338___ 1052 CAATTGACGATGCCAAGAAAAACGCCAAAAAACACGGCATGGCAAATGC- 1100
|.|||||.||.|||||..|||||||||||||.|||||.||.|.||||||
BL03091___yfj 1052 CGATTGATGACGCCAACCAAAACGCCAAAAAGCACGGAATCGAAAATGCG 1101
BSNT_01338___ 1101 CACATACGTAACAGGAACAGCCGAGCACTGGCTCCCGAAATGGACGAAAG 1150
|.| ||.|||||||||||.||||||||||||||.|||||||||||.||||
BL03091___yfj 1102 CGC-TATGTAACAGGAACGGCCGAGCACTGGCTGCCGAAATGGACAAAAG 1150
BSNT_01338___ 1151 AAGGCTTCCGCCCGGACGTCGTCATTGTAGACCCGCCAAGAACGGGCTGT 1200
||||||||.|.||.|||||||||||.||.||.|||||||||||.||||||
BL03091___yfj 1151 AAGGCTTCAGGCCCGACGTCGTCATCGTCGATCCGCCAAGAACAGGCTGT 1200
BSNT_01338___ 1201 GACAGCACGTTCTTGGACACGATCAAAAAAGTCAAACCGAAACGCTTTGT 1250
|||.||||||||.|.||.|||||||...|.||.||.|||||.||.||.||
BL03091___yfj 1201 GACCGCACGTTCCTTGATACGATCAGGCAGGTTAAGCCGAAGCGGTTCGT 1250
BSNT_01338___ 1251 CTACGTTTCCTGCAATCCATCCACGCTTGCGAAGGATTTGCAG-ACGCTG 1299
.||.||.||.||||||||.||.||.||||||||.||||||||| || .||
BL03091___yfj 1251 TTATGTCTCATGCAATCCGTCAACACTTGCGAAAGATTTGCAGTAC-TTG 1299
BSNT_01338___ 1300 TCGAAGGACTATCGCGTGGACTATATTCAGCCTGTCGATATGTTTCCGCA 1349
.|||||||.||.|..||.||.||.||||||||||||||||||||||||||
BL03091___yfj 1300 GCGAAGGATTACCATGTAGAATACATTCAGCCTGTCGATATGTTTCCGCA 1349
BSNT_01338___ 1350 GACGGCGCATGTTGAAGCAGTGGCGAGACTTGTAT---TGAAATCGTCT- 1395
|||||||||.||.|||.|.| |.|||| |||| .||
BL03091___yfj 1350 GACGGCGCACGTCGAATCGG---------TCGTATCGCTGAA----GCTG 1386
BSNT_01338___ 1396 AACTAA 1401
||.|||
BL03091___yfj 1387 AAATAA 1392
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