Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01337 and BL03090

See Amino acid alignment / Visit BSNT_01337 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_01337___yfjP.1.5803.seq
#    -bsequence dna-align/BL03090___yfjP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01337___yfjP-BL03090___yfjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01337___yfjP-BL03090___yfjP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01337___yfjP
# 2: BL03090___yfjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 901
# Identity:     649/901 (72.0%)
# Similarity:   649/901 (72.0%)
# Gaps:          74/901 ( 8.2%)
# Score: 2258.5
# 
#
#=======================================

BSNT_01337___      1 ATGTGGAAGGAAAAAGTATCTGTCACGCCTCCGTATCATTTTGACCGCGT     50
                     |||||||||||||..|||...||.||.||.||.|||||||||||||||||
BL03090___yfj      1 ATGTGGAAGGAAACTGTAAGCGTAACACCGCCTTATCATTTTGACCGCGT     50

BSNT_01337___     51 GCTGGACAGGCTGTCTTTAGACCCCCTCAATGCTGTTGA--TCGAGAGGC     98
                     |.||||||||||.||..|.||.||.||||||||.||..|  ||||.|  .
BL03090___yfj     51 GTTGGACAGGCTTTCGCTTGATCCGCTCAATGCGGTCAACCTCGACA--A     98

BSNT_01337___     99 AAGGGAAGTCCGTGTGC-------CAATCAGAAATCAAG-----CGGGGG    136
                     ||||||.|||....|||       |||||| |||..|||     ||||  
BL03090___yfj     99 AAGGGAGGTCAAGCTGCCGCTCCGCAATCA-AAACAAAGAGCCTCGGG--    145

BSNT_01337___    137 ACGTATGTATTGTAAAGGTACAAGCGTTAGGACATGCGGGCGATCCTGAG    186
                              ||||....||.||.|||...|||..|||.|..|..||.|.|
BL03090___yfj    146 ---------TTGTCGCTGTGCAGGCGACGGGAACTGCTGAAGCCCCGGCG    186

BSNT_01337___    187 TTCCTCGTCAGCGGGGAA---ACGGATCAGGGA-GAAATGATGAAGGAAA    232
                     ||...|||||||  ||||   || |||| |.|| ||.|||||.||.|||.
BL03090___yfj    187 TTTGCCGTCAGC--GGAATAGAC-GATC-GAGATGACATGATAAAAGAAG    232

BSNT_01337___    233 TCAAGCGGATTTTTCA-ATGGGAAAATCATTTGCAGCACGTTCTGGATCA    281
                     |.||.|||| |.|||| |||||||.|...|.|.||||..||.||||||||
BL03090___yfj    233 TGAAACGGA-TCTTCAGATGGGAAGAAAGTCTTCAGCCTGTACTGGATCA    281

BSNT_01337___    282 TTTTTCAAAAACGAGCCTGTCCGCTATTTTTGAAGAGCATGCCGGGACGC    331
                     .||||||.||.|.|||||.||..|.||||||||.|||||||||||.||||
BL03090___yfj    282 CTTTTCACAATCAAGCCTATCATCGATTTTTGAGGAGCATGCCGGAACGC    331

BSNT_01337___    332 CGCTTGTTCTGGA-CTACAGCGTGTACAACTGCATGATGAAATGCATTAT    380
                     ||||.||.||.|| .|.|| ..||||..|.|||.||||||||||||||||
BL03090___yfj    332 CGCTGGTGCTCGATTTTCA-TTTGTATCATTGCCTGATGAAATGCATTAT    380

BSNT_01337___    381 CCACCAGCAGCTCAATCTTTCCTTCGCTTACACGCTAACAGAACGGTTTG    430
                     ||||||||||||.||.||.||.||.|||||.|||||.||.||.|||||.|
BL03090___yfj    381 CCACCAGCAGCTGAACCTGTCTTTTGCTTATACGCTCACGGAGCGGTTCG    430

BSNT_01337___    431 TTCATGCGTTTGGCGAGCAGAAGGATGGCGTGTGGT-------GCTACCC    473
                     ||||..|.|||||.|||||.|||||.||.||.||||       |||.|||
BL03090___yfj    431 TTCACACTTTTGGAGAGCAAAAGGACGGGGTCTGGTTTTATCCGCTTCCC    480

BSNT_01337___    474 AAAGCCGGAAACGATTGCAGAACTCGATTATCAGGATCTGCGTGATCTGC    523
                            ||||||||||||.|.||.||.||..|.||||||||.||.||.|
BL03090___yfj    481 -------GAAACGATTGCACAGCTTGACTACAACGATCTGCGCGAACTTC    523

BSNT_01337___    524 AATTCAGCATGAGAAAAGCGGAATACACCATTGATACATCAAGGATGATC    573
                     |||||||||||.||||.||.|||||...|||.||||||||||||||||||
BL03090___yfj    524 AATTCAGCATGCGAAAGGCTGAATATGTCATCGATACATCAAGGATGATC    573

BSNT_01337___    574 GCAGAAGGCACACTCAG--CTTGTCA-GAGCTGCCGCA--TATGGCGGAT    618
                     |||||.||| |..|.||  ||||  | |||||....||  |||  |.|||
BL03090___yfj    574 GCAGACGGC-CGTTTAGATCTTG--ATGAGCTTGATCAATTAT--CAGAT    618

BSNT_01337___    619 GAAGACATTATGAAGAAACTGATCAAAATTAGGGGTATCGGCCCGTGGAC    668
                     |||||.||||||.|.||.|||.|.|||||.||.||.||||||||||||||
BL03090___yfj    619 GAAGATATTATGGAAAAGCTGGTGAAAATCAGAGGAATCGGCCCGTGGAC    668

BSNT_01337___    669 CGTGCAAAATATCCTCATGTTCGGACTTGGCCGTCCCAATTTATTCCCGC    718
                     |||.|||||..|.||..||||||||||.||||||||||||.|.||.|||.
BL03090___yfj    669 CGTCCAAAACGTTCTGCTGTTCGGACTCGGCCGTCCCAATCTGTTTCCGG    718

BSNT_01337___    719 TTGCCGATATCGGCCTCCAGAATGCCATCAAACGCCATTTTCAGCTGG--    766
                     ..||||||||||||.||||.||||||||||||||||||||     |||  
BL03090___yfj    719 CAGCCGATATCGGCATCCAAAATGCCATCAAACGCCATTT-----TGGCT    763

BSNT_01337___    767 ---ACGATAAGCCGGCAAAGGATGTCATGCTGGCGATGAGCAAGGAGTGG    813
                        |||||||.|||.||||.||....|||||.|..||||||||.||.|||
BL03090___yfj    764 TAAACGATAAACCGACAAAAGAACAAATGCTTGAAATGAGCAAAGAATGG    813

BSNT_01337___    814 GAGCCTTATTTAAGCTATGCGTCTTTGTATTTGTGGAGAAGTATAGAATA    863
                     .|.|||||||||||||||||.||.||||||||.|||||.||.||.||.||
BL03090___yfj    814 CACCCTTATTTAAGCTATGCTTCCTTGTATTTATGGAGGAGCATCGAGTA    863

BSNT_01337___    864 A    864
                     .
BL03090___yfj    864 G    864


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01337 and BL03090

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
