Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01320 and BL03081

See Amino acid alignment / Visit BSNT_01320 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:50
# Commandline: needle
#    -asequence dna-align/BSNT_01320___yfkJ.1.5803.seq
#    -bsequence dna-align/BL03081___yfkJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01320___yfkJ-BL03081___yfkJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01320___yfkJ-BL03081___yfkJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01320___yfkJ
# 2: BL03081___yfkJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 513
# Identity:     320/513 (62.4%)
# Similarity:   320/513 (62.4%)
# Gaps:          81/513 (15.8%)
# Score: 904.0
# 
#
#=======================================

BSNT_01320___      1 ---ATGATAAGCGTGTTATTTGTTTGTTTAGGTAACATTTGCCGGTCTCC     47
                        |||||.|..|||||||||||.||..|.||.||.||||||||.|||||
BL03081___yfk      1 GTGATGATCAAAGTGTTATTTGTCTGCCTCGGCAATATTTGCCGATCTCC     50

BSNT_01320___     48 GATGGCGGAAGCGATTTTTCGGGACCTGGCAGC-CAAAAAA---GGATTA     93
                     ||||||.|||||..|.|||...||..|    || |||||||   |||.|.
BL03081___yfk     51 GATGGCAGAAGCTGTATTTAACGATAT----GCTCAAAAAAAGCGGACTG     96

BSNT_01320___     94 GAGG---GGAAAATCAAGGCGGACTCAGCCGGTATTGGCGGCTGGCACAT    140
                     ||||   ||   |||.|.||.||.||.||.||.|..||..|||||||..|
BL03081___yfk     97 GAGGACCGG---ATCGAAGCCGATTCGGCTGGCACAGGAAGCTGGCATGT    143

BSNT_01320___    141 CGGCAACCCCCCGCATGAGGGAA------CGCAGGAGATATTGC-----G    179
                     ||||||.||.||.|||||.||.|      |||         |||     |
BL03081___yfk    144 CGGCAAACCGCCTCATGAAGGCACAAGGTCGC---------TGCTGTCTG    184

BSNT_01320___    180 CAGAGAAGGAATCAGCTTTGATGGCATG-CTGGCGCGTCAAGTCAG----    224
                     .|.|.|||  ||.||||..||.|||.|| .||      ||||.|||    
BL03081___yfk    185 AAAAAAAG--ATAAGCTGCGAAGGCCTGTATG------CAAGGCAGATTA    226

BSNT_01320___    225 -CGAACAGGATCTGGACGATTTTGATTACATCATTGCAATGGATGCAGAA    273
                      .||..||||.|.|||.|..||.|||||.|||||.|||||||||||.|||
BL03081___yfk    227 CTGACAAGGACCCGGAAGCGTTCGATTATATCATCGCAATGGATGCCGAA    276

BSNT_01320___    274 AATATCGGAAG----TCTCAGAAGCATGGCGGGTTTTAA-------AAAC    312
                     |||    |.||    |.|.||||||.|.||.||.|   |       |||.
BL03081___yfk    277 AAT----GCAGGCCATGTGAGAAGCCTTGCCGGCT---ACGGGAGCAAAG    319

BSNT_01320___    313 ACCTCGCATATCAAAAGGCTCTTGGACTATGTTGAAGATTCAGATCTGGC    362
                     .|.||    |||...|||||..|.||||||||.|||||.|..||...|||
BL03081___yfk    320 CCGTC----ATCCGGAGGCTGCTCGACTATGTCGAAGACTGTGAGACGGC    365

BSNT_01320___    363 TGACGTTCCCGATCCTTACTACACAGGGAATTTTGAAGAAGTCTGCCAAT    412
                     .||.|||||.|||||.||||||||.|||||.||||||||.||.|.|.||.
BL03081___yfk    366 AGATGTTCCTGATCCATACTACACCGGGAACTTTGAAGAGGTGTACGAAC    415

BSNT_01320___    413 TAATC---AAATCGGGCTGTGAGCATCTGCTTGCGTCTATTCAAAAAGAA    459
                     |..||   |||..|.||.|.||  || ||||...|...||||.||||| |
BL03081___yfk    416 TCGTCGCGAAAGGGTGCCGCGA--AT-TGCTGAAGGACATTCGAAAAG-A    461

BSNT_01320___    460 AAACAAT-TGTGA    471
                     |.||||| |.|.|
BL03081___yfk    462 ACACAATCTATAA    474


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.