Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01302 and BL03069
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_01302___treA.1.5803.seq
# -bsequence dna-align/BL03069___treA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01302___treA-BL03069___treA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01302___treA-BL03069___treA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01302___treA
# 2: BL03069___treA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1798
# Identity: 1238/1798 (68.9%)
# Similarity: 1238/1798 (68.9%)
# Gaps: 221/1798 (12.3%)
# Score: 4201.0
#
#
#=======================================
BSNT_01302___ 1 ATGAAAACAGAACAAACGCCATGGTGGAAAAAAGCTGTGGTTTATCAAAT 50
|||.||||..||.|||..|||||||||||||||||.||.||.||.|||||
BL03069___tre 1 ATGGAAACGAAAGAAAATCCATGGTGGAAAAAAGCAGTCGTCTACCAAAT 50
BSNT_01302___ 51 TTATCCGAAAAGCTTTAACGATACGACAGGAAACGGTGTCGGCGATCTGA 100
||||||||||||||||||.|||||.||||||||||||||||||||..|..
BL03069___tre 51 TTATCCGAAAAGCTTTAAAGATACAACAGGAAACGGTGTCGGCGACATAC 100
BSNT_01302___ 101 ACGGCATTATTGAAAAGCTTGATTACTTAAAAACACTTCAGGTG------ 144
.||||||.||.||||||||.||.|||.|.| |||.|
BL03069___tre 101 GCGGCATCATCGAAAAGCTCGACTACATCA---------AGGAGCTCGCC 141
BSNT_01302___ 145 ---GATGTGCTTTGGCTGACGCCGATTTATGATTCTCCGCAGCATGATAA 191
|||||..||||||||||||||||||||.|.||.|||||..|.||.||
BL03069___tre 142 TGTGATGTCATTTGGCTGACGCCGATTTATCAATCGCCGCAAAACGACAA 191
BSNT_01302___ 192 TGGGTACGATATTCGTGATTATTAC----TCGATTTATCCTGAATACGGA 237
.||.||.||.||..|.||.|||||| ||.||..| |||||.|||
BL03069___tre 192 CGGCTATGACATCAGCGACTATTACAGCATCCATGAA----GAATATGGA 237
BSNT_01302___ 238 ACGATGGAGGATTTTGAGCGGCT------AGTGTCC--GAAGC---ACAT 276
||.||||..||.|||||...||| ||.|.|| .|||| .|||
BL03069___tre 238 ACAATGGCCGACTTTGAAGAGCTTCTTGAAGAGGCCCACAAGCGCGGCAT 287
BSNT_01302___ 277 AAAAGAGACCTGAAAGTCGTCATGGATCTTGTTGTCAATCATACGTCAAC 326
|||.|.|| |||||||||||||.|||||.|||||.|||||
BL03069___tre 288 AAAGGTGA-----------TCATGGATCTTGTCGTCAACCATACATCAAC 326
BSNT_01302___ 327 AGAGCACAAATGGTTTCGCGA---GGCGATCTCTTCAATAGACAGCCCGT 373
||||||||.|||||||...|| |||| || |..||| |||.|..|.||
BL03069___tre 327 AGAGCACAGATGGTTTAAAGAAGCGGCG-TC-CGGCAA-AGAAAATCTGT 373
BSNT_01302___ 374 ACCGTGATTTTTATATATGGAAAGACCCACAGGAA----AACGGTTCTGT 419
||||.||.||||||||.||||||| |||.||| |||||..||..
BL03069___tre 374 ACCGCGACTTTTATATTTGGAAAG----ACATGAAGCCGAACGGCGCTCC 419
BSNT_01302___ 420 TCCGACGAACTGGGAATCGAAATTCGGCGGCTCGGCATGGGAGCTTGACG 469
.|||||.||.||||||||||||||||||||||||||.||||||.||.|.|
BL03069___tre 420 GCCGACAAATTGGGAATCGAAATTCGGCGGCTCGGCGTGGGAGTTTCATG 469
BSNT_01302___ 470 AAGCATCA----GGCCAATACTATTTGCATCTGTTTGATGTGACACAGGC 515
.|| | ||.||.||.|||.|.|||||.|.|||||||||||||||
BL03069___tre 470 CAG----AGAGCGGACAGTATTATCTCCATCTCTATGATGTGACACAGGC 515
BSNT_01302___ 516 TGATTTGAATTGGGAAAATGAAGAGGTCAGAAAGCATGTCTATGACATGA 565
.||||||||||||||.|||||||..||||||||..|.||.||.||.||||
BL03069___tre 516 GGATTTGAATTGGGAGAATGAAGCAGTCAGAAAAAAAGTGTACGAGATGA 565
BSNT_01302___ 566 TGCATTTTTGGTTTGAAAAGGGAATAGACGGCTTTAGGCTTGATGTCATC 615
|||||||.|||||||||||.|||||.||||||||.||.||||||||||||
BL03069___tre 566 TGCATTTCTGGTTTGAAAAAGGAATCGACGGCTTCAGACTTGATGTCATC 615
BSNT_01302___ 616 AACCTGATTTCTAAAGATCAGCGCTTTCCGAATGCGGAGGAAGGCGACGG 665
||..|.||.||.|||||.|||||.||.||..|||..||.||.||.|||||
BL03069___tre 616 AATGTCATCTCAAAAGACCAGCGTTTCCCTGATGATGACGAGGGGGACGG 665
BSNT_01302___ 666 CCGCTCTTTTTACACTGATGGGCCGCGGGTGCACGAATTTCTGCATGAAA 715
.|||...|||||.||.||.||||||.||||.|||||.|||.||.||||||
BL03069___tre 666 ACGCAGATTTTATACGGACGGGCCGAGGGTTCACGAGTTTTTGAATGAAA 715
BSNT_01302___ 716 TGAACGAAAAGGTGTTTTCGCATTACGACAGCATGACGGTCGGTGAGATG 765
|||||....||||.|||||..|.||.|||||||||||||||||.||.|||
BL03069___tre 716 TGAACAGGGAGGTTTTTTCAAAATATGACAGCATGACGGTCGGAGAAATG 765
BSNT_01302___ 766 TCTT---CAACAACCGTAGACCACTGTATCCGGTATACGAATCCTGACAA 812
||.| |.||||.||.|| |.||.|||||||||||.||.||.|
BL03069___tre 766 TCATCGACTACAATCGCAG---ATTGCATCCGGTATACAAACCCCG---- 808
BSNT_01302___ 813 TAAA-----GAACTTGATATGACATTCAGCTTCCATCATCTCAAGGTTGA 857
||| ||.||.||||||...||.|.|||.||||||.|.||||..||
BL03069___tre 809 -AAAGCCGTGAGCTCGATATGGTGTTTAACTTTCATCATTTAAAGGCCGA 857
BSNT_01302___ 858 CTATCCTAACGGCGAAAAATGGGC-CTTGGCGCCGTTTGATTTTTTGAAG 906
||||||.|||||.||||||||||| ||| |||...|||||||||.|.|||
BL03069___tre 858 CTATCCAAACGGGGAAAAATGGGCGCTT-GCGGATTTTGATTTTCTAAAG 906
BSNT_01302___ 907 CTGAAGGAGATCCTATCTGACTGGCAAACGGGGATGCACGCAGGAGGAGG 956
||||||.||||.||.|||||.|||||.||||..|||.|...|||.||.||
BL03069___tre 907 CTGAAGAAGATTCTTTCTGAATGGCAGACGGAAATGAATAAAGGGGGCGG 956
BSNT_01302___ 957 ATGGAACGCTCTGTTCTGGTGCAATCATGATCAGCCGCGCGTTGTATCAA 1006
|||||||||..|||||||||||||.||.||.||||||||..|.||.|||.
BL03069___tre 957 ATGGAACGCATTGTTCTGGTGCAACCACGACCAGCCGCGGATCGTCTCAC 1006
BSNT_01302___ 1007 GATATGGAGATGATGG-------CGCATATAGGGTGAAATCGGCGAAAAT 1049
|.||.||.||.||.|| ||||.| ||.||.||||||||
BL03069___tre 1007 GGTACGGGGACGACGGAAAATACCGCAAA-------AAGTCTGCGAAAAT 1049
BSNT_01302___ 1050 GCTTGCTACGGCCATTCATTTGATGCAGGGCACGCCTTATATTTATCAGG 1099
|||.||.||.||.||||||.||.|.|||||.|||||.||.|||||.||||
BL03069___tre 1050 GCTGGCAACCGCGATTCATATGCTTCAGGGAACGCCATACATTTACCAGG 1099
BSNT_01302___ 1100 GCGAGGAGCTGGGGATGACGAATCCGAAGTTCACTGACATAAGCTCC--- 1146
|.||.|||||.||||||||.||.|||||.|||..|||||| ||||
BL03069___tre 1100 GAGAAGAGCTTGGGATGACCAACCCGAAATTCGATGACAT---CTCCCTT 1146
BSNT_01302___ 1147 TATCGGGATGTCGAATCGCTGAACATGTATCACGCCTTTAAGGAAAAAGG 1196
||..|||||||||||||.||.||.|||||.|....|.|.||.|||..|||
BL03069___tre 1147 TACAGGGATGTCGAATCTCTCAATATGTACCGTATCCTGAAAGAAGCAGG 1196
BSNT_01302___ 1197 AATGGCTGATCAAGATATTACAGCCATTTTACAGGCGAAATCCCGTGACA 1246
.|.|.|.||....||.||.|..|..||.||..|.||||||||||||||.|
BL03069___tre 1197 GAAGCCGGAAGCCGAAATCATCGAAATCTTGAAAGCGAAATCCCGTGATA 1246
BSNT_01302___ 1247 ATTCCAGAACCCCCGTTCAGTGGGATGCTACG-----GAAAATGGCGGTT 1291
||||..|.||.||.||.|||||| .||| |||||||.|||.|
BL03069___tre 1247 ATTCGCGGACGCCGGTGCAGTGG-----AACGGAGAAGAAAATGCCGGGT 1291
BSNT_01302___ 1292 TTACAACGGGCACACCATGGATACCGGTTGCAGGA-AATTACCGGGAAAT 1340
||||..||||||||||.|||||.|||| |||..|| ||.|||...|||||
BL03069___tre 1292 TTACGGCGGGCACACCGTGGATTCCGG-TGCCTGACAACTACAAAGAAAT 1340
BSNT_01302___ 1341 CAATGCTGAAGCGGCGCTGAGGGATCAGAATTCGGTGTTTTACCATTATC 1390
|||.||.||||..|||||.|..||||...|||||.|.||.|||||||||.
BL03069___tre 1341 CAACGCAGAAGAAGCGCTCAACGATCCTGATTCGATTTTCTACCATTATA 1390
BSNT_01302___ 1391 AAAAATTGATTCAGATTCGCAA--AAT---GTATGACATTGTGACAGAGG 1435
||||..|||.|.||.|.||||| ||| .||| |||| |||...|
BL03069___tre 1391 AAAAGCTGAATGAGCTCCGCAAGGAATTCGATAT--CATT---ACAACCG 1435
BSNT_01302___ 1436 GTACG--TATGAGATAATTGCAAAGGATGACCCGAACA-----TTTTTGC 1478
| || |||.||.|.|| |..|||.|| |||.|| |||..||
BL03069___tre 1436 G--CGATTATCAGCTCAT---ACTGGAAGA--CGATCAAGAGCTTTACGC 1478
BSNT_01302___ 1479 GTATCTTAGACACGGCAGC-AATGAAAAGCTGCTCGTGATCAATAATTTT 1527
||||.|.|||.|||| ||| .|||||||.|||||.|||||||||||||||
BL03069___tre 1479 GTATTTGAGAAACGG-AGCGGATGAAAAACTGCTGGTGATCAATAATTTT 1527
BSNT_01302___ 1528 TACGGGACAGAGGCGGCCTTTACACTGCCGGACTCTTTAGC-GCCTGACG 1576
|||||||.||||.|.|..| ||.||| ||||||||
BL03069___tre 1528 TACGGGAAAGAGACCGAGT----------------TTCAGCTGCCTGACG 1561
BSNT_01302___ 1577 A-------ATGGAAGG---------CAGAGGTGCT-------GTTGACGA 1603
| ||.||||| || ||||.|| ..|||| |
BL03069___tre 1562 ATATTGATATTGAAGGCTATGATGCCA-AGGTTCTCATTTCCAATGAC-A 1609
BSNT_01302___ 1604 ACGATGAAGCAAGGGAAGGGCTTC---AGAACAT---GACGCTTCGC--- 1644
.|||| |||| || .||| .|||||||.|
BL03069___tre 1610 CCGAT---------------CTTCCCGAG-TCATTTAAACGCTTCACAGT 1643
BSNT_01302___ 1645 ----CCGTATGAGTCCATTGTTTATCGTTTAATG--AAACCGTGTTAA 1686
||.|||.|.||.||||||||||.|.| || |||||.||.|||
BL03069___tre 1644 GAAACCATATCAATCGATTGTTTATCATCT--TGCCAAACCATGCTAA 1689
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