Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01296 and BL03067
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:48
# Commandline: needle
# -asequence dna-align/BSNT_01296___yflA.1.5803.seq
# -bsequence dna-align/BL03067___yflA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01296___yflA-BL03067___yflA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01296___yflA-BL03067___yflA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01296___yflA
# 2: BL03067___yflA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1481
# Identity: 1098/1481 (74.1%)
# Similarity: 1098/1481 (74.1%)
# Gaps: 82/1481 ( 5.5%)
# Score: 4110.0
#
#
#=======================================
BSNT_01296___ 1 ATGTTTTTCCATCTATGGGAAATGATTCATAAACGAAAAAAGGGTGATGG 50
BL03067___yfl 0 -------------------------------------------------- 0
BSNT_01296___ 51 GATGGAACGACTATTAGTA-TGGATAGAGTATATATCTGATTGGCTGTGG 99
|||||||||.|||| |.| |||.|.||.||.|||||.||||||||||||
BL03067___yfl 1 -ATGGAACGATTATT-GAATTGGGTTGAATACATATCAGATTGGCTGTGG 48
BSNT_01296___ 100 GGTCCGCCGCTAATCATCCTGCTGACGGGGACGGGGTTGTATTTCACTAT 149
||.||.|||||.|||||.||||||||.|||||.||..|.||.||.||.||
BL03067___yfl 49 GGGCCACCGCTGATCATACTGCTGACAGGGACAGGAGTCTACTTGACGAT 98
BSNT_01296___ 150 TTTGCTGAAAGGTTTTCAATTTCGCTATCCTTTATACATTTTCAAACAGA 199
..||||||||..|||||||||||||||||||.|.||.||.||.||.||||
BL03067___yfl 99 CCTGCTGAAATTTTTTCAATTTCGCTATCCTCTCTATATCTTTAAGCAGA 148
BSNT_01296___ 200 CAATCGGCAGCGTAGGAAAAAAACCGAAGGGAGAGGGCACAGTCACACCG 249
|.|||||.||.||.||.|||||.|||||.|||||.||.||.||.||||||
BL03067___yfl 149 CGATCGGAAGTGTCGGCAAAAAGCCGAAAGGAGAAGGGACGGTTACACCG 198
BSNT_01296___ 250 CTTCAGGCATTGACCTCAGCCCTCAGTTCAACGATCGGTGCAGCGAACAT 299
||.|||||.|||||.||.||.|||||.|||||..||||.||.||.||.||
BL03067___yfl 199 CTGCAGGCTTTGACATCGGCTCTCAGCTCAACAGTCGGCGCCGCCAATAT 248
BSNT_01296___ 300 TGTCGGTGTGCCTGCCGCTATTATGTTTGGAGGGCCGGGAGCGGTTTTTT 349
.||||||||||||||.||.||.|||||.||.||.||||||||.|||||||
BL03067___yfl 249 CGTCGGTGTGCCTGCGGCCATCATGTTCGGCGGTCCGGGAGCCGTTTTTT 298
BSNT_01296___ 350 GGATGTGGCTGATTGCCTTATTTGCCATGGCGATTAAGTTTTCTGAGAGT 399
|||||||||||.|.||..|.||||||||||||||.||||||||.||.||.
BL03067___yfl 299 GGATGTGGCTGGTCGCGCTGTTTGCCATGGCGATCAAGTTTTCGGAAAGC 348
BSNT_01296___ 400 GTTCTTGCTGTTCATTACAGAGAAAAAAATGAGCAGGGTGAATACGTCGG 449
||.||.||.||.||.|||||||||||||||||..|.||.|||||.|||||
BL03067___yfl 349 GTCCTCGCCGTCCACTACAGAGAAAAAAATGAAGAAGGCGAATATGTCGG 398
BSNT_01296___ 450 GGGACCGATGTATTACATAACAAAAGGGCTGCGCATGAAATGGCTCGGCG 499
.|||||||||||||||||.|||||||||||...|||||||||||||||||
BL03067___yfl 399 TGGACCGATGTATTACATTACAAAAGGGCTCTCCATGAAATGGCTCGGCG 448
BSNT_01296___ 500 TATTCTTCTCTGTTGCGCTGATTGTGGAGCTGATCCCCAGCATTATGGTT 549
|.||.||.||.||.||||||||..|.||.||..|.||.|||||.|||||.
BL03067___yfl 449 TCTTTTTTTCAGTAGCGCTGATGATCGAACTTGTACCGAGCATCATGGTG 498
BSNT_01296___ 550 CAGGGAAATTCGGTTTCAGTCTCGCTTGCTGAGACGTTTTCTTTCAATAA 599
|||||||||||||||||.|..|||||.|||||||||||.||.||||||..
BL03067___yfl 499 CAGGGAAATTCGGTTTCCGCATCGCTGGCTGAGACGTTCTCGTTCAATCG 548
BSNT_01296___ 600 AATATACTCAGGAATCGGAATTGCGTTTTTGATCGGCTTAGTGGTGATAG 649
..|||||.|.||||||||.|||||.|||||||||||.|||||||||||.|
BL03067___yfl 549 TTTATACACCGGAATCGGGATTGCTTTTTTGATCGGTTTAGTGGTGATCG 598
BSNT_01296___ 650 GAGGGGTAAAGCGGATCGGAAAAGTAACAGAGTTTGTCGTACCTCTTATG 699
|||||.|.||.|||||.||||||||.||.|||.|.|..||.||.||||||
BL03067___yfl 599 GAGGGATTAAACGGATTGGAAAAGTGACGGAGCTCGCAGTTCCGCTTATG 648
BSNT_01296___ 700 GCAGGGGCATAC-GCGGGAGCCGGTCTCCTGATTGTTCTCATGAATCTAT 748
||||||||.||| .|||| ||||||.||||||||||..|||..||.||.|
BL03067___yfl 649 GCAGGGGCGTACATCGGG-GCCGGTTTCCTGATTGTCGTCACAAACCTTT 697
BSNT_01296___ 749 CATCAGTGCCGGCGTTTTTCTCTCTCGTTTTTTCAAATGCGTTTACCTCT 798
|.||.||.||.||.||||||||||||.|.|||||.|||||||||||.|||
BL03067___yfl 698 CCTCTGTACCCGCTTTTTTCTCTCTCATCTTTTCGAATGCGTTTACATCT 747
BSNT_01296___ 799 TCTTCAGCAGTTGGAGGGTTCGCAGGTGCTGC-GTTGGCGGAAACCGTTC 847
|||||.|||.|.||.||.||.||||||||.|| ||| ||.||||||||||
BL03067___yfl 748 TCTTCGGCATTCGGCGGCTTTGCAGGTGCGGCAGTT-GCCGAAACCGTTC 796
BSNT_01296___ 848 GCTGGGGATTTGCCCGCGGGCTTTATTCTAATGAAGCCGGAATGGGAACA 897
|||||||.|||||.||.||.||||||||.||.||||||||.|||||.||.
BL03067___yfl 797 GCTGGGGGTTTGCACGAGGCCTTTATTCCAACGAAGCCGGGATGGGGACG 846
BSNT_01296___ 898 GCCCCGATTGCACATGCGGCAGCAATGACTGATCATCCTGTGCGGCAAGG 947
||.||||||||.||.||.||.||.|||||.||.||.||||||.|.||.||
BL03067___yfl 847 GCGCCGATTGCCCACGCAGCGGCGATGACCGACCACCCTGTGAGACAGGG 896
BSNT_01296___ 948 GTTTTGGTCTGTGATCGGCATTGTCATTGACACCTTGATCATCTGCACGA 997
|||.|||.|.|||||||||||.||..|.||.||..||.|.||.|||||||
BL03067___yfl 897 GTTCTGGGCGGTGATCGGCATCGTGGTCGATACGCTGCTGATTTGCACGA 946
BSNT_01296___ 998 CCACCGCTTTTGTCGTTCTTGCATCTGGTGTCTGGACAGG-GAAGAACGC 1046
|||||||.||.|||||.||.|||||.||.||||||||.|| ||| |||||
BL03067___yfl 947 CCACCGCCTTCGTCGTGCTCGCATCAGGCGTCTGGACCGGCGAA-AACGC 995
BSNT_01296___ 1047 CTCAATTGACCCGGCAGCACTGACGACGGCTGCATTT--CAGCATTATTT 1094
.||||..||.||||..||.|||.|..|.||.|||||| |||| |||||
BL03067___yfl 996 ATCAAGCGATCCGGGGGCGCTGGCCGCAGCCGCATTTCGCAGC--TATTT 1043
BSNT_01296___ 1095 CGGTTCTGGCGGAGGGTACTTCGTTTCGGTTTCCCTAGTCTTCTTTGTCG 1144
.||..|||..||.||.||||||||.||.||.||.||.||.|||||||||.
BL03067___yfl 1044 TGGCCCTGTGGGCGGATACTTCGTCTCTGTCTCGCTCGTTTTCTTTGTCT 1093
BSNT_01296___ 1145 TATCAACCATTATGGTTGTCATTTTTTACGGCGTAAAGCAAGCTGAATTT 1194
|||||||.||.|..||.||||||||||||||.|||||.||||||||||||
BL03067___yfl 1094 TATCAACGATCACAGTGGTCATTTTTTACGGTGTAAAACAAGCTGAATTT 1143
BSNT_01296___ 1195 CTGTTCGGGCGGCTGGCAGGACACGTGATTAAATTCGTTTATTTAGCGGC 1244
||||||||.|||||.||.|||||.||||||||||||.|.||..|.||.||
BL03067___yfl 1144 CTGTTCGGACGGCTCGCGGGACATGTGATTAAATTCATCTACCTGGCCGC 1193
BSNT_01296___ 1245 TATTATCATAGGTGCCGCAGGCGGAGCAAAAGCCATTTGGGGTTTTTTGG 1294
..|..||||.|||||.||.||.||||||||.||.||.|||||.||..|.|
BL03067___yfl 1194 CGTCGTCATCGGTGCTGCCGGAGGAGCAAAGGCGATATGGGGATTCCTCG 1243
BSNT_01296___ 1295 ACTTAGCATTGGCTTTTATTCTCGTTCCAAATGTGATTGCGCTGTTGTTA 1344
|..|.||..|.|.|||.|||||..||||.|||.|..|.|||.||.||.|.
BL03067___yfl 1244 ATCTCGCGCTCGTTTTCATTCTTCTTCCGAATATTTTGGCGGTGCTGCTC 1293
BSNT_01296___ 1345 TTGAGCAGAAAGGTAAAAGCGCTGTACA--CCGAATTCTTTACATCTGAA 1392
|||||||||||.|| |||..||.||.| ..||.||.||||||||.|||
BL03067___yfl 1294 TTGAGCAGAAAAGT--AAGGTCTTTATATGATGAGTTTTTTACATCAGAA 1341
BSNT_01296___ 1393 CAGTACTACCTGAAAGATATAAGGAAAACAAAACAGAATCCTGTTTATCA 1442
.||||.||..|||||||.|| .||..|.||..||.| .||||||.|
BL03067___yfl 1342 AAGTATTATTTGAAAGACAT-CGGTCAGCAGGACGG-----CGTTTATGA 1385
BSNT_01296___ 1443 A----ACAAAAGAAGCTAAAAACTCCTAG-- 1467
| ||.||| |||..||.||.| ||.
BL03067___yfl 1386 AGGTGACGAAA-AAGTGAACAATT--TATGA 1413
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