Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01283 and BL03065
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:48
# Commandline: needle
# -asequence dna-align/BSNT_01283___yflK.1.5803.seq
# -bsequence dna-align/BL03065___yflK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01283___yflK-BL03065___yflK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01283___yflK-BL03065___yflK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01283___yflK
# 2: BL03065___yflK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 729
# Identity: 441/729 (60.5%)
# Similarity: 441/729 (60.5%)
# Gaps: 141/729 (19.3%)
# Score: 1231.5
#
#
#=======================================
BSNT_01283___ 1 ----------------ATGAAACCAGAGCGCTATTCAGTTCTTTCTCTTA 34
||||||.|| |.|||.||.
BL03065___yfl 1 TTGGAAAATCAGGAGTATGAAATCA----------------TATCTATTC 34
BSNT_01283___ 35 ATCTGGGAAAACCG--------CAGACGCTTGAATATGACGGAAAGAAAA 76
||.|.|| ||| ||.|| ||||..|||||.|||.|..
BL03065___yfl 35 ATGTAGG----CCGTCCGCGTACATAC----GAATTCGACGGTAAGCAGG 76
BSNT_01283___ 77 TCGAAACCGGC-ATCATGAAGCGGCCGGCTGAATCAGCCGTCATGCTGTA 125
|.|||| |||| |||.|||||..|||.| |||||.|.|.|| |.||
BL03065___yfl 77 TGGAAA-CGGCAATCGTGAAGGAGCCTG-----TCAGCGGACCTG-TCTA 119
BSNT_01283___ 126 T------CGGGAGAATTTTGAAGGAGACGGACAGGCGGACCTCGTCAACC 169
| ||...||||||||||||.|||||.||||||||.||..|..|||
BL03065___yfl 120 TTTGAGCCGTACGAATTTTGAAGGGGACGGGCAGGCGGATCTGATTCACC 169
BSNT_01283___ 170 ACGGCGGACCTGATAAGGCTGTCTGTGTCTACCCGGCGGAGCATTATCCG 219
||||.|||...|||||.||.||.||.|||||.||||||||.||.||...|
BL03065___yfl 170 ACGGGGGAGAGGATAAAGCGGTTTGCGTCTATCCGGCGGATCACTACATG 219
BSNT_01283___ 220 TTTTGGGAAGAGTTCCTCTCAA---GACCGCTGTCAAATGCCGCATTTGG 266
|.||||||| || |.|||..| ||..||||.||.|.||.||||||||
BL03065___yfl 220 TATTGGGAA-AG--CGTCTTGAAGCGAAAGCTGCCAGAGGCGGCATTTGG 266
BSNT_01283___ 267 AGAAAATCTGACGGTCGCGGGCCTGACTG-AGGAGAATGTTTGCATCGGG 315
||||||..||||.||....||.||.||.| |..|||| ||.||||||||.
BL03065___yfl 267 AGAAAACGTGACAGTTAAAGGGCTCACCGAAAAAGAA-GTGTGCATCGGC 315
BSNT_01283___ 316 GATGTGTTCAGGCTTGATGAAGCTGTTGTTCAGGTCAGCCAGCCGCGCCA 365
|||.|.||.|.|||.|..||||||.|||||||.|||||||||||||||||
BL03065___yfl 316 GATATCTTTAAGCTGGGGGAAGCTCTTGTTCAAGTCAGCCAGCCGCGCCA 365
BSNT_01283___ 366 GCCGTGTGTAAAGCTGGCGAAAAAGTTTG-GTGTAAAAGAAATGGTGCTG 414
|||.|||.|.|||||||| .|||.||.|| .|..||||||.||||||.|.
BL03065___yfl 366 GCCTTGTTTCAAGCTGGC-CAAACGTCTGAATCAAAAAGATATGGTGTTA 414
BSNT_01283___ 415 AAGGTCCAGCAAACCGGCTATACAGGGTTTTATTTTCGCGTGCTGGAGGA 464
||.||...|.|.|||||.||.|..||.||.|||||..|.||.||.||.||
BL03065___yfl 415 AAAGTGAGGGACACCGGGTACAGCGGATTCTATTTCAGGGTTCTCGAAGA 464
BSNT_01283___ 465 GGGCAGGGTGTCTCCCG--GCGCGAACCTTGAATTGCTG--------TCC 504
.||.|..||..|.||.| .|||| |||| |.|
BL03065___yfl 465 AGGAATTGTTGCGCCTGATTCGCG-----------GCTGCAGCTCGTTTC 503
BSNT_01283___ 505 AGAGGAGAGAAGGGCAT-----CTCCGTCCAGTTCGCCAACCGCATCAAC 549
| |||||.|.|||| |.|.|||..||..|||||.|...|.|..
BL03065___yfl 504 A----AGAGATGCGCATGAAGCCACGGTCTCGTATGCCAATCATTTGATG 549
BSNT_01283___ 550 TACCATGA----TGCAAAAAATCTCACC--GCCAT--AGAACTGATTTTA 591
|||||||| .|||| ||||| ||||| .||| |||..|
BL03065___yfl 550 TACCATGACATGGGCAA------TCACCCAGCCATTCGGAA--GATCCT- 590
BSNT_01283___ 592 AGTGAGGCT---GCACTATCGGAAAGCTGGAG-AGCGTCCTTTATGAAAA 637
|||||.| ||.||.|||||||||||||| ||| ||.|||.| ||
BL03065___yfl 591 --TGAGGTTGAAGCGCTGTCGGAAAGCTGGAGAAGC-TCATTTTT---AA 634
BSNT_01283___ 638 AGAAGGACAGGCTGCTGCCGGTTGAATAG 666
||.| |||| .|| |.|||.
BL03065___yfl 635 AGCA------GCTG-AGC-----GCATAA 651
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