Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01443 and BL03059
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:58
# Commandline: needle
# -asequence dna-align/BSNT_01443___ygaE.1.5803.seq
# -bsequence dna-align/BL03059___ygaE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01443___ygaE-BL03059___ygaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01443___ygaE-BL03059___ygaE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01443___ygaE
# 2: BL03059___ygaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1095
# Identity: 789/1095 (72.1%)
# Similarity: 789/1095 (72.1%)
# Gaps: 57/1095 ( 5.2%)
# Score: 2740.0
#
#
#=======================================
BSNT_01443___ 1 ATGAAACTTGGTGCCCGCATTTTCAAAACCGGGATTGCGATTACACTTGC 50
|||||||||||||||||.|||||||||||.||.|||||.|||||.|||||
BL03059___yga 1 ATGAAACTTGGTGCCCGTATTTTCAAAACAGGCATTGCCATTACGCTTGC 50
BSNT_01443___ 51 CCTTTATTTGGCTTCGTGGATCGGGCTTCCCGCGCCGATTTTCGCTGGAA 100
.|||||..|.||.||.|||.||||.|||||..|.||..|.|||||.||||
BL03059___yga 51 GCTTTACCTCGCGTCTTGGCTCGGCCTTCCGACTCCTGTCTTCGCGGGAA 100
BSNT_01443___ 101 TTGCAGCGATATTTGCGATCCAGCCGTCGATTTACCGCTCTTTTCTCATT 150
|.||.||.||.||.|||||||||||.|||||.||.||.||.|||.|.|..
BL03059___yga 101 TCGCGGCTATCTTCGCGATCCAGCCTTCGATCTATCGTTCATTTTTGACG 150
BSNT_01443___ 151 ATTATTGACCAGGTTCAAGCAAATATCATCGGAGCTGTGATTGCCACAG- 199
|||.|.||.||.||.||.||.||.||.|||||||| .|||||||
BL03059___yga 151 ATTGTCGATCAAGTGCAGGCGAACATTATCGGAGC------AGCCACAGC 194
BSNT_01443___ 200 -----TGTTCGGCCTTATTTTCGGACCCAGCCCGATTATGATCGGGTTAA 244
|.||.||.||||||||.|.||||||.|||||.||.|||||.||.|
BL03059___yga 195 CATTATTTTTGGACTTATTTTTGAACCCAGTCCGATCATCATCGGATTGA 244
BSNT_01443___ 245 CAGCAGTTATTGTCATTACAATCATGCTGAAACTTAAAATTGAACATACA 294
|.||.||.||.||||||||.||||...||||.||.||.||.||..|.||.
BL03059___yga 245 CGGCGGTAATCGTCATTACGATCAACTTGAAGCTGAAGATCGAGAACACG 294
BSNT_01443___ 295 ATTTCAATTGCTCTTGTAACAGTTATTGCGATATTAGAATCCGCCGGTGA 344
|||||.||.||||||||.||.||||||||.|||.|.||...|.||||.||
BL03059___yga 295 ATTTCGATCGCTCTTGTCACCGTTATTGCCATACTGGAGAGCTCCGGCGA 344
BSNT_01443___ 345 CGACTTTTTAATGTTCGCGCTGATCAGAACAAGCACAGTCATCTTAGGGG 394
|.||||||||..|||.||..||.|.|||||..|.||.||.||.||.||.|
BL03059___yga 345 CAACTTTTTATGGTTTGCTTTGGTGAGAACCGGAACGGTTATTTTGGGCG 394
BSNT_01443___ 395 TGCTTTCTTCCTTTATCGTCAACCTTGTGTTTTTGCCTCCTAAGTACGAA 444
||.|.|||.|.||..|.||||||||..|.|||.||||.|||||.||.|||
BL03059___yga 395 TGTTGTCTGCGTTCTTGGTCAACCTGATTTTTCTGCCGCCTAAATATGAA 444
BSNT_01443___ 445 ACAAAGC---TGATTCATAATACCGTCGAAAACACCGAAGAAATTATGAA 491
||.|||| |.|..||||.| ||.|||||.||.||.|||.|.||.||
BL03059___yga 445 ACGAAGCTCGTCAGCCATATT---GTTGAAAATACAGATGAAGTCATTAA 491
BSNT_01443___ 492 GTGGATCAGATTGTCCATGCGGCAGTCGACAGAGCATTCGATTTTGAAAG 541
.|||||||||||||..|.||||.||.|.||.||.|||||.||..||||||
BL03059___yga 492 ATGGATCAGATTGTTGACGCGGAAGACAACGGAACATTCCATGCTGAAAG 541
BSNT_01443___ 542 AGGATATTGAAAAACTGAAAGAAAAAATGATCAAGCTTGATCAGACATAT 591
|.||.||||||||||||||||||||||||||.|||.||||.| ||.|.|
BL03059___yga 542 AAGACATTGAAAAACTGAAAGAAAAAATGATGAAGGTTGACC--ACCTTT 589
BSNT_01443___ 592 -CTT-CTATATAAAGAAGAAAGAAGTTACTTTAAGAAAACG----ACTTA 635
||| ||.||.||||||||||||||.||.|| |||||| ||.||
BL03059___yga 590 ACTTGCTCTACAAAGAAGAAAGAAGCTATTT----AAAACGTTCCACATA 635
BSNT_01443___ 636 TGTGAAATCA-AGAAAGCTTGTCCTGTTCAGACAGGCCATTATTACTGCA 684
||| |||.|| .|||||||.||.||||||||||||||.||.|||.|..|.
BL03059___yga 636 TGT-AAAACAGCGAAAGCTCGTGCTGTTCAGACAGGCGATCATTGCATCC 684
BSNT_01443___ 685 AATCGGGCGCTTGATACATTGAAGAAGCTGCATCGTCTGGAAAACGAGAT 734
||.||.|||||||||.|..||||.||||||||.||.||.|||||||||.|
BL03059___yga 685 AACCGTGCGCTTGATGCCCTGAAAAAGCTGCACCGGCTTGAAAACGAGTT 734
BSNT_01443___ 735 CTATCATATGCCGGAAGAGTTTCAGGAAACACTGACTGAAGAACTTGATT 784
.|||||.|||||.|||||.|||||.|||||.|||...|||||.||.||||
BL03059___yga 735 TTATCACATGCCTGAAGAATTTCAAGAAACGCTGGTCGAAGAGCTCGATT 784
BSNT_01443___ 785 ACCTGCTTTACTGGCACGAACGGATTTTGATGAGGTTTGTCGGAAAAATC 834
|.||.||..|.|||||||||||.|||||.|||||.||.|||||.|..|||
BL03059___yga 785 ATCTCCTCCATTGGCACGAACGAATTTTAATGAGATTCGTCGGCAGGATC 834
BSNT_01443___ 835 AAGCCGCATGATGACGCGGTT----------GAAGAAGGCATCCAGTATA 874
||..||||.|||.||| | ||||||||...|..|||.|
BL03059___yga 835 AAAACGCAGGATCACG----TCGACCTGCACGAAGAAGGAGACGTGTACA 880
BSNT_01443___ 875 AGCAGCTTTTAACAAAGTCATTTTTAAAAAATCAG--CAAAATACGGATG 922
|.||||..||.||..|.|||||..|.|||||.||| ||||.|| .|.|
BL03059___yga 881 AACAGCACTTGACCGAATCATTCCTGAAAAACCAGGACAAATTA--AAAG 928
BSNT_01443___ 923 AGGAGCTTATTGATTACAACATGCTCAATATTATGGCAAGCGCCGTGGAA 972
|.||.||..|.||.|||||.|||||.|..||||||||.|||.|.||.|||
BL03059___yga 929 AAGAACTGTTGGACTACAATATGCTGACCATTATGGCGAGCACTGTAGAA 978
BSNT_01443___ 973 TATCGCGAGCAGCTTGAACATTTAGAAACACTT-ATCACAAGTTTTCAAA 1021
||.||.||.||||||||.|||||.||||| ||| .||.||||.|||||.|
BL03059___yga 979 TACCGAGAACAGCTTGAGCATTTGGAAAC-CTTGCTCTCAAGCTTTCAGA 1027
BSNT_01443___ 1022 CGTATCATCCGAAAGACTGCGAAATAGAA----ACAGAAGAGTAA 1062
||||.||....||||||.||||..|.||| | .|||||.|||
BL03059___yga 1028 CGTACCACAAAAAAGACAGCGAGCTTGAAGTTGA-GGAAGAATAA 1071
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