Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05105 and BL03052

See Amino acid alignment / Visit BSNT_05105 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:13
# Commandline: needle
#    -asequence dna-align/BSNT_05105.1.5803.seq
#    -bsequence dna-align/BL03052___yvaP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05105-BL03052___yvaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05105-BL03052___yvaP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05105
# 2: BL03052___yvaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 361
# Identity:     220/361 (60.9%)
# Similarity:   220/361 (60.9%)
# Gaps:          56/361 (15.5%)
# Score: 630.0
# 
#
#=======================================

BSNT_05105         1 ATGAACCAATCAGAAATGTGTCCTAGATTTGAAAAAGCAGTCGACATCTT     50
                     ||||.||.||||....|.|||||.|.|||||||||||.|.|..|.||..|
BL03052___yva      1 ATGAGCCTATCATCTTTATGTCCGAAATTTGAAAAAGGAATGAAAATGAT     50

BSNT_05105        51 AAGTAAACGCTGGGTCGCTTTAATCGTATT--TCAGC-TCTTGAACGGGT     97
                     ||||.|.||||||..||..||.|||  |||  .|||| |||| |||||..
BL03052___yva     51 AAGTCAGCGCTGGAACGGATTCATC--ATTCACCAGCTTCTT-AACGGCC     97

BSNT_05105        98 CGCAGCGATTTAGCGAAATTGAAGCAGCACTTCCAAATCTAAGCGGCAGA    147
                     |||||||.|||.||.|.||.|||.|..|.|||||.|   |.|||||.||.
BL03052___yva     98 CGCAGCGGTTTTGCCATATAGAATCTTCCCTTCCCA---TCAGCGGAAGG    144

BSNT_05105       148 GTTCTGTCAGAACGGCTGAAAGAACTTGAGCTTGAAGGAGTAGTGAAGCG    197
                     .|..|.||.|||.|..|.||||||||.||.|..||.||..|..|..|.||
BL03052___yva    145 CTGTTATCCGAAAGATTAAAAGAACTCGAACACGAGGGCATCATCCACCG    194

BSNT_05105       198 GGATGT-CATCCCTGAAACTCCGGTTCGCATCGAATATTCATTGACTGAT    246
                     |.|||| .|| ||.|||||||||||.||.||||||||.||..|||||||.
BL03052___yva    195 GCATGTGTAT-CCAGAAACTCCGGTGCGGATCGAATACTCCCTGACTGAA    243

BSNT_05105       247 AAAGGAAAGGCACTAGCAC----CCATATTAGG--TGAGATTTCTAAATG    290
                     |||||..||||.||.|.||    ||.|| .|||  ||..|     |||||
BL03052___yva    244 AAAGGGCAGGCGCTCGAACCGGTCCTTA-AAGGAATGGAA-----AAATG    287

BSNT_05105       291 GGCGACTGAATGGATTGACCCTTCCTTTCTTGACTAA-------------    327
                     |.||...||||||||.||         |||.|||.||             
BL03052___yva    288 GTCGCAGGAATGGATCGA---------TCTGGACGAAGCCAATGAACGGG    328

BSNT_05105       327 -----------    327
                                
BL03052___yva    329 AAAATCATTAA    339


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