Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01430 and BL03035
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_01430___csbB.1.5803.seq
# -bsequence dna-align/BL03035___csbB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01430___csbB-BL03035___csbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01430___csbB-BL03035___csbB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01430___csbB
# 2: BL03035___csbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1014
# Identity: 700/1014 (69.0%)
# Similarity: 700/1014 (69.0%)
# Gaps: 78/1014 ( 7.7%)
# Score: 2308.0
#
#
#=======================================
BSNT_01430___ 1 ATGAAGCAAGGATTAATCTCGATTATTATCCCGTCTTACAATGAAGGGTA 50
.|||||.|||||||..|.||.||.|||||.||.||.||||||||||....
BL03035___csb 1 GTGAAGAAAGGATTCGTTTCAATCATTATTCCTTCATACAATGAAGCAAG 50
BSNT_01430___ 51 TAATGTCAAACTCATTCATGAATCTTTAAAAAAGGAATTTAAAAACATTC 100
.|||.|.|||.|.|||.|||||||.||||..||.||||||.||..||||.
BL03035___csb 51 CAATATTAAATTGATTTATGAATCGTTAAGGAACGAATTTCAATCCATTG 100
BSNT_01430___ 101 ATTATGACTATGAAATATTCTT-CATAAACGACGGAAGTGTTGAT-GACA 148
|||||||.|||||||| ||.|| ||||||.||.|||||...|||| || |
BL03035___csb 101 ATTATGATTATGAAAT-TTATTACATAAATGATGGAAGCACTGATCGA-A 148
BSNT_01430___ 149 CGCTTCAGCAGATCAAAGACTTGGC-------AGCGACGTGCAGCCGGGT 191
|..|..||.|.||.|||.|..|.|| ||||| ||| .||
BL03035___csb 149 CATTGGAGGAAATTAAAAAACTAGCCGAAAAAAGCGA---GCA----TGT 191
BSNT_01430___ 192 AAAATATATATCTTTTTCTCGAAACTTTGGAAAAGAAGCCGCAATTTTGG 241
.||||||||.||.|||||.||.||.||.||.||.||.||.||.||..|.|
BL03035___csb 192 GAAATATATTTCGTTTTCACGGAATTTCGGCAAGGAGGCAGCCATCCTTG 241
BSNT_01430___ 242 CGGGCTTTGAGCATGTTCAGGGCGAGGCGGTTATTGTAATGGATGCCGAT 291
|.||.|||.||||||..|..|||||.||.|||.|.||.||||||||.|||
BL03035___csb 242 CCGGTTTTCAGCATGCCCGCGGCGATGCTGTTGTGGTGATGGATGCGGAT 291
BSNT_01430___ 292 CTGCAGCATCCGACATATTTGCTGAAGGAATTTATCAAAGGCTACGAAGA 341
.|||||||.||||||||..|.|||.|.||.|||||.|||||.||.||.||
BL03035___csb 292 TTGCAGCACCCGACATACCTCCTGCACGATTTTATTAAAGGGTATGAGGA 341
BSNT_01430___ 342 AGGGTATGACCAAGTCATTGCCCAAAGGAACAGAAAAGGGGACAGCTTTG 391
|||.|||||.|||||..|.|||||..|.||||||||.||.||||.|...|
BL03035___csb 342 AGGCTATGATCAAGTGGTCGCCCAGCGCAACAGAAAGGGAGACAACCCCG 391
BSNT_01430___ 392 TCCGCTCACT-CTTATCATCTATGTACTACAAGTTCATTAATAAAGCGGT 440
|.||||| || .||.|||||..|.||.|||...||.||.||.||.|||||
BL03035___csb 392 TGCGCTC-CTATTTGTCATCCCTTTATTACCGCTTTATCAACAATGCGGT 440
BSNT_01430___ 441 GGAAGTCGATTTGCGTGACGGTGTCGGTGACTTCAGATTGTTAAGCCGCC 490
.||.||.|||||..|.|||||.|||||.||.||..|..|.||||||.|..
BL03035___csb 441 AGAGGTTGATTTAAGGGACGGCGTCGGCGATTTTCGTCTTTTAAGCAGAA 490
BSNT_01430___ 491 AAGCTGTGAATGCACTTTTGAAGCTGAGCGAAGGAAACCGCTTCTCAAAA 540
||||.||.|||||..|..||||||||||||||||.|||.|.|||||||||
BL03035___csb 491 AAGCCGTTAATGCGATGCTGAAGCTGAGCGAAGGCAACAGGTTCTCAAAA 540
BSNT_01430___ 541 GGCCTTTTTTGCTGGATTGGCTTTGATCAGAAAATTGTATTTTATGAAAA 590
||.||.|||||||||||.||.|||||.||.||.|||||.|.|||.||.||
BL03035___csb 541 GGGCTGTTTTGCTGGATCGGTTTTGACCAAAAGATTGTTTATTACGAGAA 590
BSNT_01430___ 591 TGTCGAACGAAAAAACGGCACCTCCAAATGGTCGTTCAG-CAGTCTGTTT 639
.||||||.|.||||||||.|..|||||.|||||||||.| ||.| ||||.
BL03035___csb 591 CGTCGAAAGGAAAAACGGAAAATCCAAGTGGTCGTTCCGCCACT-TGTTG 639
BSNT_01430___ 640 AATTACGGCATGGACGGCGTCGTTTCATTTAATCATAAG-CCGCTGAGAT 688
||.||.||.||.|||||..|.||.||.||.|| ||..|| |||||||||.
BL03035___csb 640 AACTATGGAATCGACGGGATTGTGTCGTTCAA-CAACAGACCGCTGAGAA 688
BSNT_01430___ 689 TATGTTTTTATACAGGCATTTTCATCCTGCTGCTTTCCATC----ATTTA 734
|.||||||||..|.||.|||||.||||| .||||.||| |||||
BL03035___csb 689 TGTGTTTTTACGCCGGTATTTTTATCCT----TTTTCTATCGCTTATTTA 734
BSNT_01430___ 735 TATCATTGCCACATTC--------GTTAAAATTCTGACTAACGGTATTTC 776
||||...||||||||| .||||||| |||||.|...
BL03035___csb 735 TATCGCGGCCACATTCATCAGGATCTTAAAAT--------ACGGTGTGAT 776
BSNT_01430___ 777 TGTGCCTGGGTATTTCACCATTATCTCAGCAGTGTTATTTCTCGGCGGAG 826
|||.||.||.|||||.||.|||||.||.||.||..|.|||||||||||.|
BL03035___csb 777 TGTTCCCGGCTATTTTACGATTATTTCCGCCGTCCTGTTTCTCGGCGGCG 826
BSNT_01430___ 827 TACAGCTGTTAAGCCTTGGAATTATAGGTGAATATATCGGCCGAATCTAT 876
|.|||||..|.|||||.||||||||.||.|||||.|||||.||.||.|||
BL03035___csb 827 TTCAGCTTCTCAGCCTCGGAATTATCGGCGAATACATCGGGCGCATTTAT 876
BSNT_01430___ 877 TATGAAACAAAAAAACGCCCGCATTATTTGATCAAAGAAGCGAATATCCC 926
|||||.||.|||||.||.||.|||||.|||||..|.||.||.||.|| |
BL03035___csb 877 TATGAGACGAAAAAGCGGCCTCATTACTTGATACAGGAGGCAAACAT--C 924
BSNT_01430___ 927 GAACAAAGACCTGCCTGAAACGAACGAATTAAAAAGCATGCGGCGTCTGA 976
|..||..|| |||||..| |.||||.|.||
BL03035___csb 925 GCTCATGGA-------GAAACTCA-----TGAAAATCGTG---------- 952
BSNT_01430___ 977 CAAAAATGCACTGA 990
||| .||||
BL03035___csb 953 ----AAT--CCTGA 960
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