Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01411 and BL03031
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_01411.1.5803.seq
# -bsequence dna-align/BL03031___yfhC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01411-BL03031___yfhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01411-BL03031___yfhC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01411
# 2: BL03031___yfhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 634
# Identity: 320/634 (50.5%)
# Similarity: 320/634 (50.5%)
# Gaps: 218/634 (34.4%)
# Score: 844.5
#
#
#=======================================
BSNT_01411 0 -------------------------------------------------- 0
BL03031___yfh 1 ATGAACGACACGCTAGAAATCCAAAGTATTCGCGATTGCGTCAGAAATAG 50
BSNT_01411 1 ----------------------------------------------ATGC 4
.|||
BL03031___yfh 51 AAGAACGATTCGAAAGTTTAAACAGGATCCGGTGCCGAAGGAAGTGGTGC 100
BSNT_01411 5 TTGAA-------ACG--GCAAAATATGCGCCAAATCACAGAG-TGACAGA 44
|.||| |.| ||.|..|||||.||.||.|||| || |||||||
BL03031___yfh 101 TGGAACTCTTGGAAGATGCGATTTATGCTCCGAACCACA-AGCTGACAGA 149
BSNT_01411 45 GCCATGGAGATTTATTTACGTTTCCAGTGA--GACA--GGTAAAGCGAAC 90
.||.|||.||||.||||| |.|| |.|| ||.| ||.|||..|||.
BL03031___yfh 150 ACCGTGGCGATTCATTTA--TATC--GGGACGGAAAACGGGAAAAAGAAG 195
BSNT_01411 91 CTCATCAATAC-----ATTT----GCAGCGTTCTCTATGAA-ATC-CAAG 129
| ||.| |||| ||.||||| |.|| |.| ||||
BL03031___yfh 196 C------ATGCCGACAATTTAAAAGCGGCGTT-----TAAAGAGCTCAAG 234
BSNT_01411 130 CCGGATATGACAGAGGAA-AAGCTTCAAAATTTCAAAAA---CACACTTG 175
|||.||||| .||||| || |||| ||||.|| || |
BL03031___yfh 235 CCGAATATG---CAGGAAGAA----CAAA---TCAATAAGTTCA-----G 269
BSNT_01411 176 GG-----------CGCGTTCCGGGATTTCTCCTCGTCGTGTTTCG--GGA 212
|| .|||||||||..||||||.|||| |.||..| .||
BL03031___yfh 270 GGAGCATATTCTCAGCGTTCCGGCTTTTCTCTTCGT--TATTATGAAAGA 317
BSNT_01411 213 AGATGAAAACGAAAGAGCGCGGGAC------GACGATTTTGCGGCAACAA 256
|||.||||||||| ||||.| ||.||||||||.||....|
BL03031___yfh 318 AGACGAAAACGAA------CGGGTCAGACGGGATGATTTTGCAGCCGTCA 361
BSNT_01411 257 GCTCGTTGATTCAAAATCTTCAGCTTCTCGCTTGGGAAAAAGGAATCGGC 306
|||..||.||.||||||||.|||||.|||||||||||||||||.||||||
BL03031___yfh 362 GCTGTTTAATCCAAAATCTGCAGCTGCTCGCTTGGGAAAAAGGCATCGGC 411
BSNT_01411 307 ATGGTTTGGAAAAGCGGAAAAATCCTTTATGACAAAGAAGTCCATCAGGC 356
|||||.|||||||||||..||.|.||.|.|.|..||..|.|.|| ||||
BL03031___yfh 412 ATGGTATGGAAAAGCGGGGAAGTTCTCTCTCATGAAACACTGCA-CAGG- 459
BSNT_01411 357 CTTT----GGTTTGCAGGATAATGAGCGTTTCGCCGCTATCATACAAACG 402
|| ||..||.||....||||||...|.||.|||.||.|.||.|..
BL03031___yfh 460 --TTAATGGGACTGAAGCGCGATGAGCAGGTAGCAGCTCTCTTGCAGATC 507
BSNT_01411 403 GGTTATCCTGACGAGGCGCCGGAAGTGAAAAAACGCACA-----CCGATC 447
||.|||||||..||....||.||||.||| ||||| ||| .|
BL03031___yfh 508 GGATATCCTGCGGAAATTCCTGAAGCGAA-----GCACAGGACGCCG-GC 551
BSNT_01411 448 CGC---------GACCG-GTTCACTGAAATGTAA 471
||| .|||| .||.|||.||
BL03031___yfh 552 CGCACAGCTTTTTACCGAATTAACTTAA------ 579
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