Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01369 and BL03021

See Amino acid alignment / Visit BSNT_01369 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_01369___yfiE.1.5803.seq
#    -bsequence dna-align/BL03021___yfiE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01369___yfiE-BL03021___yfiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01369___yfiE-BL03021___yfiE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01369___yfiE
# 2: BL03021___yfiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity:     589/933 (63.1%)
# Similarity:   589/933 (63.1%)
# Gaps:         147/933 (15.8%)
# Score: 1570.5
# 
#
#=======================================

BSNT_01369___      1 ATGAC-CAGC--ATTCATGAGGATACACACATTGGCTATGCCAAACTCAC     47
                     ||||| ||||  ||.||...||..||..|..|.||.||||.|||.||.|.
BL03021___yfi      1 ATGACGCAGCAAATCCACCCGGGCACTGAGCTCGGATATGTCAAGCTGAA     50

BSNT_01369___     48 AATTCGCAGTCTGGAGCGTTCGCTTCAGTTCTACTGTAACGTCATCGGTT     97
                     ..|..||.||||.||..|.|||.||...||.|||.|..|.||.|||||||
BL03021___yfi     51 GGTGAGCCGTCTTGAAAGATCGGTTTCTTTTTACAGGGATGTGATCGGTT    100

BSNT_01369___     98 TTCAAGTCTTAAAA-AAGACGGATCGCCAA----GCTGAATTAACGGCTG    142
                     |||||||.|||||| |.|||||     |||    ||.||.||.||.|.||
BL03021___yfi    101 TTCAAGTATTAAAACAGGACGG-----CAAAACGGCGGAGTTCACAGTTG    145

BSNT_01369___    143 ACGGGAAA----CGCGTACTGCTT-ATTCTTGAAGAAAATCCGAGCGCTG    187
                     ||||.|||    |||.|     || ||..||||.||.|.|||.|..||||
BL03021___yfi    146 ACGGAAAAAATCCGCTT-----TTGATCATTGAGGAGATTCCAAATGCTG    190

BSNT_01369___    188 TCG-TCTTGCCTGAACGGTCTGTGACAGGTCTTTATCACTTTGCGATTCT    236
                     |.| |||| ||||||||.||.|...||||.||||||||.|||||.|||.|
BL03021___yfi    191 TTGTTCTT-CCTGAACGATCGGCAGCAGGCCTTTATCATTTTGCCATTTT    239

BSNT_01369___    237 TCTTCCGGACAGGAAAG-AACTTGGGATCGC-GCTCGCCCGCCTGA----    280
                     .|||||..|| .||||| |.||.||.||.|| |          |||    
BL03021___yfi    240 GCTTCCAAAC-CGAAAGCAGCTCGGCATGGCTG----------TGAAGCA    278

BSNT_01369___    281 -TTGAAC----ACGGCATTGCTATCGGACATGGAGACCATGCTGTCAGCG    325
                      ||||.|    .||||||||...||||.||.|||||.||...||||||||
BL03021___yfi    279 TTTGATCCGCGCCGGCATTGAACTCGGCCAGGGAGATCACCTTGTCAGCG    328

BSNT_01369___    326 AAGCGCTTTACCTGTCTGATCCTGACGGAAACGGCATTGAAATGTA-CGC    374
                     |.|||.|||||.||||.||||||||...|||.||.||.|||||.|| |||
BL03021___yfi    329 AGGCGTTTTACTTGTCAGATCCTGATCAAAATGGAATCGAAATCTACCGC    378

BSNT_01369___    375 TGACCGCCCCCGCAGCA--CATGGCAGCGTGATCGGGAAGGAAACTACGT    422
                      |||||.||.|| || |  .||||.||||.|||..|.|.||.||||||||
BL03021___yfi    379 -GACCGTCCGCG-AG-AGGGATGGAAGCGCGATGAGCAGGGGAACTACGT    425

BSNT_01369___    423 CATG---ACGACAACCGCTGTTGACATTGAGGGCCTTCTGGAAGAGGCAG    469
                     .|||   ||| .|.|||  |||||..|..|.||.|||||||||||   ||
BL03021___yfi    426 GATGGGTACG-GAGCCG--GTTGATGTCCAAGGACTTCTGGAAGA---AG    469

BSNT_01369___    470 GAGATGAGC-------GGAAAACATCG--CTTCC----GAACGATACAAT    506
                     ..|||| ||       ||.||     |  |||||    |||    ||||.
BL03021___yfi    470 CCGATG-GCCACGAATGGCAA-----GGTCTTCCCCCGGAA----ACAAA    509

BSNT_01369___    507 CATCGGACACATTCATCTGCATATCAGTGATTTGAAAGAAGCAAAGGCGT    556
                     .|||||||||.|.|||.|.||..||.|.||||||||..|.||.||.|..|
BL03021___yfi    510 AATCGGACACGTCCATTTTCACGTCCGGGATTTGAAGCAGGCGAAAGAAT    559

BSNT_01369___    557 TTTATACA-GATGTACTGGGCTTTGACATTGTCGGAAACTATGCGGGCAT    605
                     |||| .|| ..|||||||||.|||||.||....|||.|.|||.....|||
BL03021___yfi    560 TTTA-CCACTCTGTACTGGGATTTGATATCACAGGAGATTATCAACACAT    608

BSNT_01369___    606 GTCCGCCCTCTTCGTTTCAGCCGGGGGGTACCACCATCATATCGGCTTAA    655
                     |||.||.||.||.||.||.|||||.||.|||||.||||||||||||||||
BL03021___yfi    609 GTCAGCGCTTTTTGTCTCTGCCGGAGGCTACCATCATCATATCGGCTTAA    658

BSNT_01369___    656 ACATTTGGGCGGGA-AGAAATGCGCC----GCCTAAACCGACAAATGC--    698
                     ||||.|||||.||| || .|||||||    |||    |||....||||  
BL03021___yfi    659 ACATCTGGGCCGGACAG-CATGCGCCATTTGCC----CCGCTTGATGCGG    703

BSNT_01369___    699 CAGCGGACTAGATTATTATACTGTTGTCCTGCCTCACCAAGAGGAGCT--    746
                     ||  ||..|.|..|||||.||.|||.|..|.||..|.|.||.|||.||  
BL03021___yfi    704 CA--GGCATGGCGTATTACACGGTTCTTTTACCGAATCGAGCGGAACTTG    751

BSNT_01369___    747 ---GGATTTGGTGGCAAACCGAGTCAAAC----ATGC-CGGG-TATTCGA    787
                        |.|||     |||||      .||||    |.|| |||| |||.|..
BL03021___yfi    752 ACCGAATT-----GCAAA------AAAACTGAAAAGCTCGGGTTATGCCG    790

BSNT_01369___    788 TTGAAGA-GACGGAAAACAGC----TTTCGTGTGAAAGACCCTGTTTCCG    832
                     ||||..| || .|||||| ||    ||   |||.||||||||.|..||.|
BL03021___yfi    791 TTGAGCATGA-AGAAAAC-GCATGGTT---TGTTAAAGACCCGGCATCAG    835

BSNT_01369___    833 GCGCCT----ATATTACATTTGTGA---TTTAA    858
                     |    |    ||||.|.||   |||   |||.|
BL03021___yfi    836 G----TATTGATATCAGAT---TGACCGTTTGA    861


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