Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01368 and BL03020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01368___yfiD.1.5803.seq
# -bsequence dna-align/BL03020___yfiD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01368___yfiD-BL03020___yfiD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01368___yfiD-BL03020___yfiD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01368___yfiD
# 2: BL03020___yfiD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 492
# Identity: 282/492 (57.3%)
# Similarity: 282/492 (57.3%)
# Gaps: 135/492 (27.4%)
# Score: 689.5
#
#
#=======================================
BSNT_01368___ 1 ATG---AATAAAT-CATTTGAAATTGGCACATTACTTTTAAGAGTTATTA 46
||| ||.|||| | |||.|.||..|||||.|||||.|..|..|||
BL03020___yfi 1 ATGAGCAACAAATAC----GAATTAGGTGCATTAATTTTACGTTTGGTTA 46
BSNT_01368___ 47 CAGGTATTATCTTTTTTG-TTCACGGTTTATCAAAGTTTCAGGG------ 89
|||||.||| |.|||||| |||||||..|.|||||.|||||.||
BL03020___yfi 47 CAGGTCTTA-CATTTTTGCTTCACGGGCTTTCAAAATTTCAAGGCGGGAT 95
BSNT_01368___ 90 -------AATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCA 132
|.||.||| |||.|||.||||..|.||..||||.
BL03020___yfi 96 TGAAAATACTGTAGG----------ATTCTTCAGCAGTGTCGGAATTCCG 135
BSNT_01368___ 133 AGCTTTATGGCGTATGTCATCGCAGCGATTGAACTCATTGG-CGGA-GTG 180
.|||||.|.||.||| ||||.||||||| |.|..||||| |||| |.|
BL03020___yfi 136 GGCTTTCTCGCCTAT---ATCGTAGCGATT-ATCGAATTGGCCGGAGGGG 181
BSNT_01368___ 181 CTTGT----CTTCTTCGGATTGGCTACACGT---ATTGTCGGTGTACTGT 223
||| | .||| ||||..|.|.||||||| ||||.|..|.|| |
BL03020___yfi 182 CTT-TGATGATTC-TCGGGCTCGGTACACGTGTGATTGGCCTTTTA---T 226
BSNT_01368___ 224 TCGCTCTT-ACACTGATCGGTGCCATCATCACTGTTAAGCTGAAAGCGCC 272
|.||..|| .|| ||.|.||.|||||..||||||||||||| ...||||
BL03020___yfi 227 TTGCGATTGTCA-TGCTGGGGGCCATTTTCACTGTTAAGCT--CTCCGCC 273
BSNT_01368___ 273 --ATTCATGGGCA---ATGCA------------GAATTTGA--TTACCTT 303
.||||||||.| |||.| |||||||| ||||
BL03020___yfi 274 GGTTTCATGGGAACGGATGGAGGCGCAGGCTATGAATTTGACGTTAC--- 320
BSNT_01368___ 304 CTGCTT-TTGACA---TCCATTCACCTGGCGCTT-ACTGGAAGCCG-ATT 347
|||| ||| || ||..|..||.|||| ||| |..||||||.| ||
BL03020___yfi 321 --GCTTCTTG-CAATGTCTGTATACTTGGC-CTTGAGCGGAAGCAGCAT- 365
BSNT_01368___ 348 CCTGGCGCTGGACCCATTTG------TGTT-------TAAAGGAAAAAAG 384
||||..|| ||| ||.| |.|||||||.|||
BL03020___yfi 366 ------GCTGTCCC---TTGGGGAAATGATCCTGAAATCAAGGAAAGAAG 406
BSNT_01368___ 385 ----AACAGA-AACGTTTCAGCATAA---------------- 405
|||||| .||| ||||| ||
BL03020___yfi 407 GAAAAACAGATGACG---CAGCA-AATCCACCCGGGCACTGA 444
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