Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04696 and BL03008
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:52
# Commandline: needle
# -asequence dna-align/BSNT_04696___yukF.1.5803.seq
# -bsequence dna-align/BL03008___yukF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04696___yukF-BL03008___yukF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04696___yukF-BL03008___yukF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04696___yukF
# 2: BL03008___yukF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1273
# Identity: 880/1273 (69.1%)
# Similarity: 880/1273 (69.1%)
# Gaps: 83/1273 ( 6.5%)
# Score: 2776.5
#
#
#=======================================
BSNT_04696___ 1 ATG------CCGAATGATCCGTTTAAATATAGTTTTGACAGACTTGAAGA 44
||| |..||..||||.|||||||||...|.||||.|..|.|||||
BL03008___yuk 1 ATGAACAATCGAAACAATCCTTTTAAATATCAATATGACCGTTTAGAAGA 50
BSNT_04696___ 45 TGTGGCTGATCATATCAGCGACGTTCTGCGGTGCCCGATCACCATAGAGG 94
||||||.||||||||||||||.||.|||...||.|||||.||.|||||.|
BL03008___yuk 51 TGTGGCAGATCATATCAGCGAGGTGCTGGACTGTCCGATTACGATAGAAG 100
BSNT_04696___ 95 ATGTTAACCACAAGCTGCTTGCCTACAGTACACACAGCGACTGCACAGAC 144
|..|.||||||...||.|||||.|||||.||.||||||||||.|||.|||
BL03008___yuk 101 ACATCAACCACCGCCTCCTTGCTTACAGCACCCACAGCGACTACACGGAC 150
BSNT_04696___ 145 CCTGCCCGGACGTCTACCATTATTGGCAGAAGGGTACCGGAGAAGGTGAT 194
||.||..|.|||||.||.||.||.||.||..|.||.|||||.||.||.||
BL03008___yuk 151 CCGGCGAGAACGTCAACAATCATCGGAAGGCGCGTTCCGGAAAAAGTCAT 200
BSNT_04696___ 195 TAACAAGTTGTGGAAAGACGGGACAATTCCAGCTCTCTTAAAAACGGACC 244
.||||||.|.|||||.||.||.||.|||||.||..|..|.|||||.|||.
BL03008___yuk 201 CAACAAGCTTTGGAAGGATGGAACGATTCCCGCCTTGATGAAAACCGACG 250
BSNT_04696___ 245 AGCCGATCAGAGTCAAGCAAATTGATGAAGTCGGGCT---GAGCAATCGC 291
|.||||||||.|||.|.|||||.|||||||||||.|| |||| |||
BL03008___yuk 251 AACCGATCAGGGTCGAACAAATCGATGAAGTCGGCCTGTCGAGC---CGC 297
BSNT_04696___ 292 GTCGCTATTTCGATTTGGAAAAACAAGC-AAGTGCTTGGCTTCATATGGG 340
||.||.|||||.||.||||||||| ||| |.||..|.||.||.||.||||
BL03008___yuk 298 GTGGCGATTTCAATCTGGAAAAAC-AGCGAGGTTATCGGTTTTATCTGGG 346
BSNT_04696___ 341 CTCTTGAGATCCAAAAAACATTGTCCGATGAAGATCTGCTGAC--ATTGC 388
|.||.||.|.|||||||||..||||.||.||.||.|| |.|| .|||.
BL03008___yuk 347 CGCTGGAAAGCCAAAAAACGCTGTCGGAAGACGAGCT--TCACCTTTTGA 394
BSNT_04696___ 389 AAATGGCAGCAAAAGCAGTGAAAAACAAGCTTCT-CAAACT--TCAAATC 435
|..||||.||..|..|.||.||.||||||||.|| | || |||..||
BL03008___yuk 395 AGCTGGCCGCGGATTCCGTAAAGAACAAGCTGCTGC---CTTATCAGGTC 441
BSNT_04696___ 436 AGAAAAACGAAAAATGAAGAACGCAGCCAAGAATTTTTCTGGAAAATGCT 485
.||||||..|||||||||.|.||||||||.||||||||||||||..|..|
BL03008___yuk 442 CGAAAAAGAAAAAATGAACAGCGCAGCCAGGAATTTTTCTGGAAGCTATT 491
BSNT_04696___ 486 GACCGGACACATCCATCAGGAGGAT---GATATGGCGGATGGGTTCCATA 532
||||||.||||| |..|||.||| ||.||..|.||.||.||.||..
BL03008___yuk 492 GACCGGGCACAT---TTCGGAAGATCAGGAAATCTCCGACGGCTTTCACC 538
BSNT_04696___ 533 AGCTTGGAATGGCCGCTCCTTCAGAGTT-TTCCGTTATGATCATCCGCAT 581
|||||||.||.|..|.||||||| |.|| |||.||.||.||||||||..|
BL03008___yuk 539 AGCTTGGCATCGGAGTTCCTTCA-ACTTATTCGGTCATCATCATCCGGCT 587
BSNT_04696___ 582 AAATGGCGAGCT-GACTGAAAAAATCGAACAGCAGCTGCAATATTTACAG 630
.||.|.|||..| || .|||||||.||||.|||||||.||.||.||.|.|
BL03008___yuk 588 GAAAGACGAAATCGA-AGAAAAAACCGAAAAGCAGCTCCATTACTTGCTG 636
BSNT_04696___ 631 GAAACGACCCAGCAGGTTTACGTGCTGCTGGCGACCGTAGATTCCAATGA 680
||||||||.||||||.|..|..|.||.|||||.||..|.||.|..|||||
BL03008___yuk 637 GAAACGACGCAGCAGCTGCAAATCCTTCTGGCTACAATCGACTATAATGA 686
BSNT_04696___ 681 ACTTATTATATTAACCTCACCCAAAAC---------AGATCATCCTTTTC 721
.||.|||.|..|..|.||.||.||||| ||..||.|| .|||
BL03008___yuk 687 GCTGATTGTCCTCGCTTCGCCAAAAACGGGGCAAAAAGGGCAGCC-GTTC 735
BSNT_04696___ 722 AA-GATTTAAAACAGTTTGCTTTAAGTACGCAAAAACAGC-TGAAGGAGC 769
|| ||||||||.||.|||||....|.||..|||||.||.| |||| ||||
BL03008___yuk 736 AATGATTTAAAGCAATTTGCCGCGAATATACAAAAGCAACTTGAA-GAGC 784
BSNT_04696___ 770 GGTATAAAATAGAA------GACGTTTCTATCGCTTTTGGCGGAATATAC 813
|.||||||.| ||| .||| |||||..|.||||||||.|||
BL03008___yuk 785 GCTATAAACT-GAATAACTGCACG-----ATCGCGATCGGCGGAATGTAC 828
BSNT_04696___ 814 AACTCTATTTCTTTTGT-CTCCCGCTCCTATCAGGAAGCATTGTC--CGT 860
|.||..||..|..|||| |.||.| ||.|||||||||||..|.|| ||
BL03008___yuk 829 AGCTTGATCACCCTTGTACACCAG-TCTTATCAGGAAGCGCTCTCGGCG- 876
BSNT_04696___ 861 CTTAAAAACGAAGGAACGGTTCGCTGAAGAGACCAAACATTTTTTCAGCT 910
||.||...| |||||.||.||..|.||.|||||.|..||..|..||||||
BL03008___yuk 877 CTGAAGGTC-AAGGAGCGTTTTCCCGATGAGACAAGGCACCTCGTCAGCT 925
BSNT_04696___ 911 TTTCTGAGTTAGGTATTTATCAATACTTAGATGTCTTAAATGAAAAACGG 960
||||.|||.|.||.||.||.||.||..|.||.||..|.|..|||||||||
BL03008___yuk 926 TTTCAGAGCTCGGCATCTACCAGTATCTCGACGTGCTCAGCGAAAAACGG 975
BSNT_04696___ 961 AAACAGGCGGGCCATTATAATTACTCGCTTTCCAAA-----CTGGAACAA 1005
|||||.||..||.||...||.||.| |||| || ||.|||..|
BL03008___yuk 976 AAACATGCAAGCTATCCAAACTATT--CTTT---AATGCAGCTTGAAGCA 1020
BSNT_04696___ 1006 TATGACCGGGATCACCAGTCAAATCTGGTAGAGACGCTAGAGCGCTTTAT 1055
|||||....||.|||||.||.|||||.||.||||||||.||.|..||.||
BL03008___yuk 1021 TATGATAAAGAGCACCACTCCAATCTTGTCGAGACGCTTGAACAATTCAT 1070
BSNT_04696___ 1056 TGAA-GCGGACAGCAACGTGAATACGGCTTC---CAAGCTGTTAAATATA 1101
.||| || |||||||||||.||.||.||..| .|||||| ||.||.
BL03008___yuk 1071 CGAATGC-GACAGCAACGTCAACACCGCCGCAAAAAAGCTG---AACATT 1116
BSNT_04696___ 1102 CACGTTAATACGCTGAATTACCGACTCAAGCGGATCAGCCAGATCGCTGA 1151
|||||.||.||||||||||||.|.||.||.||.||||||.|.|||||.||
BL03008___yuk 1117 CACGTCAACACGCTGAATTACAGGCTGAAACGCATCAGCAAAATCGCCGA 1166
BSNT_04696___ 1152 AATTGATTTGAAAAATGTGAATCAAAAATTCACCATCTATTTAGATATCA 1201
|||.|||||.|||||..|.|||.|||||||.||.||.|||.|.||.||||
BL03008___yuk 1167 AATCGATTTAAAAAACATCAATGAAAAATTTACGATTTATCTTGAAATCA 1216
BSNT_04696___ 1202 AACTTCGGCACATGGATTTGTGA 1224
|.|||||..|||||.||||||||
BL03008___yuk 1217 AGCTTCGCAACATGCATTTGTGA 1239
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