Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01784 and BL02995
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01784___yhjH.1.5803.seq
# -bsequence dna-align/BL02995___yhjH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01784___yhjH-BL02995___yhjH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01784___yhjH-BL02995___yhjH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01784___yhjH
# 2: BL02995___yhjH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 324/616 (52.6%)
# Similarity: 324/616 (52.6%)
# Gaps: 197/616 (32.0%)
# Score: 823.5
#
#
#=======================================
BSNT_01784___ 1 ATG--------AACACAGATCATACAAAACGCAATCTTTTTGAATTGT-- 40
||| ||||||...||.|||| |.|| |.|||||..|||
BL02995___yhj 1 ATGGAACATTTAACACACGCCAAACAA---GAAA--TATTTGACCTGTAC 45
BSNT_01784___ 41 ATGCGGAGCTCATTCATCAGCAGG-------AGAAATGGGAGGGGCTTAT 83
||..| ||||||||||||||||| |||||..| |.||
BL02995___yhj 46 ATCAG--GCTCATTCATCAGCAGGAGCAGCAAGAAACCG-------TCAT 86
BSNT_01784___ 84 TAAA----GCCTTTTTATCT--GACGAATTGAGGAAGCTGGATGTAGAGC 127
.||| || |||| |..|||.|||..|||.|| ||||
BL02995___yhj 87 GAAAGAGCGC------ATCTCCGCAGAAATGAAAAAGATG------GAGC 124
BSNT_01784___ 128 ACG-----GGAG--TAAAT----CTCAATTGACGATGACAGAAATTCATG 166
.|| |||| .|||| |||||| |||.|.||.||.||
BL02995___yhj 125 GCGAATTCGGAGCTGAAATGAGACTCAAT-----ATGTCTGACATCCA-- 167
BSNT_01784___ 167 TTCTATC--TTGTGTCGGGGACAATGAACCAATTAATGTCACGTCGATAG 214
|.|.||| .||..|.||.|||.|.|||||.||.||.|||||.|||||..
BL02995___yhj 168 TACGATCAGCTGCATTGGCGACCACGAACCGATCAACGTCACCTCGATTT 217
BSNT_01784___ 215 CAGAAAAAATGAATACGA-----CAAAAGCGACTGTATCACGCATCAGCA 259
|.||.||.||| || ||||||||||.||.|||.|.||||.|.
BL02995___yhj 218 CCGAGAAGATG-----GAATTTTCAAAAGCGACGGTCTCAAGGATCACCG 262
BSNT_01784___ 260 CAAAATTGCTCGGCGCA----GGCTTCCTTCA-CAGAACACAGCTCAGCG 304
|||| |||...||.| |||| |.||| ||.||||||||||||||
BL02995___yhj 263 CAAA---GCTGACCGAAAAAGGGCT--CGTCAGCAAAACACAGCTCAGCG 307
BSNT_01784___ 305 ATAATAAAAAGGAGGTCTACTTCCGATTGACGCCTGCTGGAAAAA---AG 351
||||||||||.||..|||||||||| ||.|.||| |.||| ||
BL02995___yhj 308 ATAATAAAAAAGAAATCTACTTCCG-TTTAAGCC------ATAAAGGGAG 350
BSNT_01784___ 352 CTGCA-----CAGTTT-----------GCACAAATATTATCATCAGAAGG 385
..||| ||..|| ||||.| ||..|||
BL02995___yhj 351 AAGCATCCATCACCTTCACCAGCGGGAGCACGA----TAAAATC------ 390
BSNT_01784___ 386 CTGAACAGCGTTTTCTGTCATTTTTTGACCGCTATACCGAGGAAGAGATT 435
|||||..|.|||.....||||||...|||.|||.|....||.|||||.
BL02995___yhj 391 --GAACAAAGATTTAAACGATTTTTAAGCCGGTATTCATTTGATGAGATC 438
BSNT_01784___ 436 CTTTTTGCGGAACGGC--TGTTTCGGGA------------------TCT- 464
|||||||| .|.||| |||||||||| |||
BL02995___yhj 439 CTTTTTGC--CAGGGCTTTGTTTCGGGACTTATTAACGGCGGATTTTCTC 486
BSNT_01784___ 465 --GGTGACAAAATGGTATCCGTCGTCAGAAGAAATTGAAGGGGGGCTTCC 512
||..|||.|| ||||.||.|
BL02995___yhj 487 GCGGATACAGAA----------------AAGACATAG------------- 507
BSNT_01784___ 513 TAGCATTTTTAAATAA 528
BL02995___yhj 507 ---------------- 507
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